MGE detailed information
MGE type: Genomic_island MGE length: 19387 bp
Accession: NC_020518 Location: 223678..243064 Organism: Escherichia coli str. K-12 substr. MDS42 Replicon: chromosome
Accession: NC_020518 Location: 223678..243064 Organism: Escherichia coli str. K-12 substr. MDS42 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECMDS42_RS01005 (ECMDS42_0196) | 218829..219743 | - | 915 | WP_000648572.1 | DNA-binding transcriptional regulator YafC | - |
| ECMDS42_RS01010 (ECMDS42_0197) | 219984..220784 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| ECMDS42_RS01015 (ECMDS42_0198) | 220788..221411 | + | 624 | WP_000016007.1 | class I SAM-dependent methyltransferase | - |
| ECMDS42_RS01020 (ECMDS42_0199) | 221459..222817 | - | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| ECMDS42_RS01025 (ECMDS42_0200) | 222889..223644 | - | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| ECMDS42_RS01030 (ECMDS42_0201) | 223678..224400 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| ECMDS42_RS01035 (ECMDS42_0202) | 224397..224864 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| ECMDS42_RS01040 (ECMDS42_0203) | 224929..225660 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| ECMDS42_RS01050 (ECMDS42_0205) | 226197..226982 | + | 786 | WP_001086141.1 | lipoprotein | - |
| ECMDS42_RS01055 | 227119..227598 | - | 480 | WP_001236645.1 | protein YkfM | - |
| ECMDS42_RS01060 (ECMDS42_0206) | 227608..227964 | - | 357 | Protein_201 | hypothetical protein | - |
| ECMDS42_RS01065 (ECMDS42_0207) | 227962..228240 | + | 279 | Protein_202 | ISAs1 family transposase | - |
| ECMDS42_RS01070 (ECMDS42_0208) | 228281..229051 | - | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| ECMDS42_RS01075 (ECMDS42_0209) | 229205..229678 | + | 474 | WP_000532698.1 | Ivy family C-type lysozyme inhibitor | - |
| ECMDS42_RS01080 (ECMDS42_0210) | 229721..232165 | - | 2445 | WP_000973083.1 | Acyl-coenzyme A dehydrogenase | VF |
| ECMDS42_RS01085 (ECMDS42_0211) | 232405..232983 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| ECMDS42_RS01090 (ECMDS42_0212) | 233189..233956 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| ECMDS42_RS01095 (ECMDS42_0213) | 233927..234667 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| ECMDS42_RS01100 (ECMDS42_0214) | 234823..235101 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| ECMDS42_RS01105 (ECMDS42_0215) | 235104..235364 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| ECMDS42_RS01110 (ECMDS42_0216) | 235574..236323 | + | 750 | WP_000056849.1 | hypothetical protein | VF |
| ECMDS42_RS01115 (ECMDS42_0217) | 236499..236996 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| ECMDS42_RS01120 (ECMDS42_0218) | 237220..238959 | - | 1740 | WP_001334802.1 | Flagellar biosynthesis protein FlhA | VF |
| ECMDS42_RS01125 (ECMDS42_0219) | 238904..239689 | + | 786 | WP_000207552.1 | Chemotaxis protein LafU | VF |
| ECMDS42_RS01130 (ECMDS42_0220) | 239760..240815 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| ECMDS42_RS01135 (ECMDS42_0221) | 240867..241160 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| ECMDS42_RS01140 (ECMDS42_0222) | 241163..241561 | + | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| ECMDS42_RS01145 (ECMDS42_0223) | 241571..242023 | + | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| ECMDS42_RS01150 (ECMDS42_0224) | 242329..242595 | + | 267 | WP_001295202.1 | RtcB family protein | - |
| ECMDS42_RS01155 (ECMDS42_0225) | 242528..243064 | + | 537 | WP_001326471.1 | peptide chain release factor H | - |
| ECMDS42_RS01160 (ECMDS42_0226) | 243121..244578 | - | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| ECMDS42_RS01165 (ECMDS42_0227) | 244839..245297 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| ECMDS42_RS01170 (ECMDS42_0228) | 245389..246633 | + | 1245 | WP_000189532.1 | esterase FrsA | - |
| ECMDS42_RS01175 (ECMDS42_0229) | 246691..247092 | + | 402 | WP_000174689.1 | sigma factor-binding protein Crl | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli strain D9 | Genomic island | TA50883, TA50884 | NZ_CP010152 | 814981..830941 | 0.008 | |
| Escherichia coli strain HST04 | Genomic island | TA59649, TA59650 | NZ_CP013952 | 1005049..1023721 | 0.003 | |
| Escherichia coli strain Ecol_AZ155 | Genomic island | TA71373, TA71374 | NZ_CP019005 | 1633843..1649803 | 0.008 | |
| Escherichia coli strain DTU-1 | Genomic island | TA95270, TA95271 | NZ_CP026612 | 1928821..1948207 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 strain K-12 | Genomic island | TA112080, TA112081 | NZ_CP032667 | 3628827..3647499 | 0.003 | |
| Escherichia coli strain L37 | Genomic island | TA116233 | NZ_CP034589 | 1068707..1088478 | 0.009 | |
| Escherichia coli strain ATCC 98082 | Genomic island | TA116299, TA116300 | NZ_CP034658 | 234818..254204 | 0 | |
| Escherichia coli strain NEB_Turbo | Genomic island | TA157123, TA157124 | NZ_CP053605 | 236137..255523 | 0 | |
| Escherichia coli strain M159-1 | Genomic island | TA167252 | NZ_CP058719 | 2062856..2082551 | 0.009 | |
| Escherichia coli strain EF7-18-51 | Genomic island | TA178443 | NZ_CP063487 | 917537..938816 | 0.009 | |
| Escherichia coli strain JM83 | Genomic island | TA208742, TA208743 | NZ_CP077969 | 234816..254202 | 0 | |
| Escherichia coli strain SF10 | Genomic island | TA209979, TA209980 | NZ_CP079767 | 2489242..2507914 | 0.003 | |
| Escherichia coli strain HL15 | Genomic island | TA210004, TA210005 | NZ_CP079770 | 2494430..2513102 | 0.003 | |
| Escherichia coli strain KMS2001 | Genomic island | TA210489, TA210490 | NZ_CP079992 | 1126040..1146215 | 0.001 | |
| Escherichia coli strain TOP10 | Genomic island | TA212292, TA212293 | NZ_CP080620 | 4267651..4287826 | 0.001 | |
| Escherichia coli strain ER2683 | Genomic island | TA237819, TA237820 | NZ_CP093221 | 127529..148066 | 0.005 | |
| Escherichia coli strain USDA-ARS-USMARC-51408 | Genomic island | TA257219, TA257220 | NZ_CP104114 | 981391..997351 | 0.008 | |
| Escherichia coli strain MLI108K1 | Genomic island | TA269694, TA269695 | NZ_CP116994 | 4083298..4099258 | 0.008 | |
| Escherichia coli strain MLI108K2 | Genomic island | TA269725, TA269726 | NZ_CP117001 | 4083934..4099894 | 0.008 |