Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00432  |
| T6SS type | Type i3 |
| Strain | Pseudomonas brassicacearum subsp. brassicacearum NFM421 |
| Replicon (RefSeq) | chromosome (NC_015379) |
| Location | 6692399..6714079 |
| Function | - |
| Comment | - |
| References | [1] Ortet P et al (2011) Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum. J Bacteriol. 193(12):3146. [PudMed:21515771] [2] Lalaouna D et al (2012) Phenotypic switching in Pseudomonas brassicacearum involves GacS- and GacA-dependent Rsm small RNAs. Appl Environ Microbiol. 78(6):1658-65. [PudMed:22247157] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PAAR | PpkA | PppA | TagF | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| T6CP012501 | PpkA | PSEBR_RS29675 | 6687922..6691008 | - | 3087 | WP_196233452.1 | serine/threonine-protein kinase |
| T6CP012502 | PppA | PSEBR_RS29680 | 6691017..6691748 | - | 732 | WP_003206909.1 | protein phosphatase 2C domain-containing protein |
| T6CP012503 | TagF | PSEBR_RS29685 (tagF) | 6691749..6692402 | - | 654 | WP_013694569.1 | type VI secretion system-associated protein TagF |
| T6CP004482 | TssM | PSEBR_RS29690 (tssM) | 6692399..6695899 | - | 3501 | WP_013694570.1 | type VI secretion system membrane subunit TssM |
| T6CP004483 | TssL | PSEBR_RS29695 | 6695896..6697206 | - | 1311 | WP_013694571.1 | DotU family type VI secretion system protein |
| T6CP004484 | TssK | PSEBR_RS29700 (tssK) | 6697213..6698547 | - | 1335 | WP_003206916.1 | type VI secretion system baseplate subunit TssK |
| T6CP004485 | TssJ | PSEBR_RS29705 (tssJ) | 6698563..6699069 | - | 507 | WP_003206918.1 | type VI secretion system lipoprotein TssJ |
| T6CP011875 | FHA | PSEBR_RS29710 (tagH) | 6699138..6700679 | - | 1542 | WP_013694572.1 | type VI secretion system-associated FHA domain protein TagH |
| T6CP004486 | TssA | PSEBR_RS29715 (tssA) | 6701094..6702131 | + | 1038 | WP_003206922.1 | type VI secretion system protein TssA |
| T6CP004487 | TssB | PSEBR_RS29720 (tssB) | 6702213..6702719 | + | 507 | WP_003206923.1 | type VI secretion system contractile sheath small subunit |
| T6CP004488 | TssC | PSEBR_RS29725 (tssC) | 6702722..6704218 | + | 1497 | WP_003206925.1 | type VI secretion system contractile sheath large subunit |
| T6CP004489 | TssD | PSEBR_RS29730 | 6704439..6704927 | + | 489 | WP_003206927.1 | type VI secretion system tube protein Hcp |
| PSEBR_RS29735 | 6705009..6705464 | + | 456 | WP_013694574.1 | type VI secretion system amidase effector protein Tae4 | ||
| PSEBR_RS29740 | 6705461..6705910 | + | 450 | WP_003206930.1 | hypothetical protein | ||
| T6CP004490 | TssE | PSEBR_RS29745 (tssE) | 6705904..6706416 | + | 513 | WP_003206934.1 | type VI secretion system baseplate subunit TssE |
| T6CP004491 | TssF | PSEBR_RS29750 (tssF) | 6706413..6708272 | + | 1860 | WP_003206936.1 | type VI secretion system baseplate subunit TssF |
| T6CP004492 | TssG | PSEBR_RS29755 (tssG) | 6708236..6709288 | + | 1053 | WP_003206938.1 | type VI secretion system baseplate subunit TssG |
| T6CP004493 | TssH | PSEBR_RS29760 (tssH) | 6709281..6711971 | + | 2691 | WP_003206940.1 | type VI secretion system ATPase TssH |
| T6CP004494 | TssI | PSEBR_RS29765 | 6712142..6714079 | + | 1938 | WP_003206941.1 | type VI secretion system tip protein VgrG |
| PSEBR_RS29770 | 6714098..6714532 | + | 435 | WP_003206943.1 | DUF1795 domain-containing protein | ||
| T6CP011876 | PAAR | PSEBR_RS29775 | 6714545..6718984 | + | 4440 | WP_013694576.1 | RHS domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0351 |
PSEBR_RS22825 (GacS) | protein | TCS-RR | Pseudomonas brassicacearum subsp. brassicacearum NFM421 | chromosome (NC_015379) | 5188012..5190762 (+) | 503459407 | hcp1 transcript (↓); hcp2 transcript (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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