Detailed information of component protein


Summary

Component ID T6CP011876
Component protein type PAAR
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (1480 a.a.); Nucleotide sequence (4440 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29775
Coordinate (Strand) 6714545..6718984 (+)
NCBI ID WP_013694576.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DUF6531 PF20148.1 8.8e-23 295..374
RHS PF03527.16 3.9e-14 1227..1263
RES PF08808.13 1.1e-11 1366..1476
PAAR_motif PF05488.15 1.2e-08 173..217
RHS_repeat PF05593.16 5.8e-07 730..764
RHS_repeat PF05593.16 1.8e-06 650..678
RHS_repeat PF05593.16 4.1e-05 794..826
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1480 a.a.    

>T6CP011876 NC_015379:6714545-6718984 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [PAAR]
MSDALWAARLGDALNHTSMMADILGGVLEVAANIAITAVATAAVVAATGITVATGGLGCFLLGAVVGAVVGLAMSKTGAD
KGLSDICEGIGNALFPPTVQANILTGSTNTLTNNIPAARAAGAIESHVAPAGTELEAPEAEPSYLDMAENFFSQMWRPTV
AVPAPGAVPKPLDMIICMKHPPMPPQFLAEGSDKVTINGQPAVRSGDRSTCDATVVSAGLISPDVTIGGGSVVVREIRSG
KTPGVGLAVTALLMLKGGKGKFLSNLPCMLVGGAASMAVSSAMGAAANAAMGSSNPVHAATGAKVLGDVEEMDFVLPGIL
PIDWQRFYNSRDERRDGLFGAGWSVPYEVRVEILPHPDGGETLVYSDEQGRRIDMGSIPLGGAVFSAGEGLSVRRHANGE
LLIESADGLYRLFEPTPANAALLRLNQLGDRNDNRIYLDYDDNGRLAQLRDTFDLTRIALAYDERWPQRVSRIDRLYADQ
RREVLMHYGYDGQGDLAQVRQSNDQVKRRYAYDAGRRMVEHQLPTGLRCFYEWALVENLEWRVVGHWTDAGDAYTFDYDL
AAGTTRITDGLQRISTRRWDTRYQITETTDPLDRTWTFQWNDESQLLGATDPNGGQHQFSYDEAGNLCETRDPLGRSEST
LWLEHWALPLAETDAAGNTWQYRYDARGNRIRETDPLGHVTRYRHDAHGQVVEVIDATGKSKTMRWTALGQLSEHTDCSG
YTTRLSYCERGLLLSSTDALGERTLFSYDDQGRLLSKQLPDGRTEHYQRDASGQLIGYSDPAGHTTNFQHTLSGQLRVRT
DAHGRRVELSYDNYGRLLALTNENGERYRFAWDAADRLTAQHSLDGSLKRYAYDPLDNVTRVEALAVPGSTDLDLSPQAP
IIHELERDAMGRLVAKVTADGRTEYRYDALDQVNAITFTSQTGEVQSLGLRYDALGQLITEQGWAGNLEHRYDELGNLTQ
TLLPDGRWLNRLHYGSGHLHQINLDGQVISDFERDRLHREVLRTQGRQSTRSEYDRSGRLRARQRRQQGQSTLLPPVAQS
LFGYDASDQRVERFDSQPEASHRQLLHYDATGRILASQDNLQGQRESFAYDPAANLLDGLGTGQVAHNRLLTYQDKRYRY
DGFGRMVEKRSARRGVQRFRYDAEQRLVEVRNDNGSVVKMTYDPLGRRIEKAEYDRHATLLNRTRFTWDALQLLQEHRDS
QTSLYIYADDSHEPLARVDGLGEQQKVRYYHNDLNGLPEQLSEADGHTLWRARYQVWGNTAEELREPYYIEEQNLRFQGQ
YLDRETGLHYNTLRFYDPDIGRFTTPDPIGLAGGLNLYQYAPNPVSWIDPFGLMKCSTPPKGRKVNRTVYRFEEPGRIST
TWTAHKWNVASRHRYTAPGLGGVYGANSRKTAMGEVNHWGVDLSTRVLVSKKVQLNNVLDLTRADVRKQLGVSLKSITGD
KYTQTHQIGAWAKANGYDGILAPSARNPTGSNLISFAGF*

  Nucleotide sequence: 4440 bp    

>T6CP011876 NC_015379:6714545-6718984 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [PAAR]
ATGTCTGACGCACTCTGGGCCGCTCGGCTAGGCGACGCGCTGAACCACACCTCGATGATGGCCGATATCCTCGGCGGCGT
CCTGGAAGTAGCCGCGAACATTGCGATCACCGCGGTAGCGACGGCTGCCGTGGTAGCGGCCACGGGCATTACCGTTGCCA
CTGGCGGCTTGGGTTGCTTCCTACTCGGCGCGGTGGTGGGCGCCGTGGTCGGCCTCGCCATGAGCAAGACCGGGGCCGAC
AAGGGGCTAAGCGACATATGCGAGGGCATCGGCAACGCCCTCTTCCCGCCCACGGTGCAGGCCAACATCCTCACCGGCTC
CACCAACACCTTGACCAACAACATCCCTGCCGCCCGCGCCGCCGGAGCGATCGAGTCCCATGTCGCGCCGGCCGGCACCG
AACTTGAAGCACCCGAAGCCGAACCCAGCTACCTGGACATGGCCGAGAATTTCTTCTCACAGATGTGGCGTCCCACCGTT
GCCGTGCCCGCGCCCGGTGCCGTGCCCAAGCCGCTGGACATGATCATCTGCATGAAACACCCGCCGATGCCGCCGCAATT
CCTGGCCGAAGGCTCGGACAAAGTCACCATCAATGGTCAGCCCGCGGTGCGCAGCGGCGACCGCAGCACCTGCGATGCGA
CCGTGGTGTCGGCCGGGCTGATTTCCCCTGACGTGACCATTGGCGGCGGTTCGGTGGTGGTGCGCGAGATCCGCAGCGGC
AAGACCCCGGGCGTCGGGCTGGCGGTCACGGCGCTGCTGATGCTAAAGGGCGGCAAGGGTAAATTCCTCAGTAACCTGCC
GTGCATGTTGGTCGGCGGTGCGGCGTCGATGGCGGTCAGTAGCGCGATGGGCGCCGCGGCCAACGCCGCGATGGGCTCCT
CGAACCCCGTGCACGCCGCCACCGGGGCCAAAGTGTTGGGCGATGTCGAGGAGATGGACTTCGTCCTGCCCGGCATCTTG
CCGATCGACTGGCAACGCTTCTACAACAGCCGCGACGAACGCCGCGACGGGTTGTTCGGTGCCGGTTGGAGCGTACCCTA
TGAGGTGCGCGTCGAAATCCTGCCCCATCCAGACGGCGGCGAAACCCTGGTTTATAGCGACGAACAGGGCCGACGCATCG
ACATGGGTTCCATCCCGTTGGGCGGCGCCGTGTTCAGTGCCGGTGAAGGCCTCAGCGTGCGACGGCATGCCAACGGCGAG
CTGCTGATAGAGAGCGCGGACGGACTGTACCGCTTGTTCGAACCCACGCCAGCCAATGCAGCGCTGCTACGCCTGAACCA
ACTGGGTGACCGCAACGACAACCGTATCTACCTGGACTACGACGACAACGGACGCCTGGCGCAACTGCGTGACACCTTCG
ACCTGACCCGCATCGCACTGGCGTATGACGAGCGCTGGCCACAACGAGTCAGCCGGATCGACCGCCTCTATGCCGATCAA
CGCCGGGAAGTGCTGATGCACTATGGCTACGACGGCCAGGGCGATCTGGCGCAGGTCCGTCAGTCCAACGACCAGGTAAA
ACGTCGCTACGCCTACGACGCCGGGCGGCGAATGGTGGAACACCAACTGCCTACCGGGCTTCGCTGTTTCTATGAATGGG
CGTTGGTTGAAAACCTGGAATGGCGCGTGGTTGGCCACTGGACCGACGCGGGCGACGCCTACACCTTCGATTACGACCTG
GCCGCCGGGACCACGCGCATCACCGACGGCTTGCAGCGCATCAGCACCCGTCGCTGGGATACCCGCTATCAGATCACCGA
AACCACCGACCCGTTGGATCGCACCTGGACCTTCCAGTGGAACGACGAAAGCCAGTTGCTGGGGGCGACCGATCCCAACG
GCGGACAACATCAGTTCAGCTATGACGAAGCCGGGAACCTCTGCGAAACCCGCGACCCGCTGGGGCGCAGCGAGTCAACC
CTGTGGCTCGAACACTGGGCCCTGCCCCTGGCTGAAACCGATGCCGCGGGAAATACCTGGCAGTACCGCTATGACGCGCG
GGGCAACCGCATTCGCGAAACCGACCCGCTGGGCCACGTCACCCGCTATCGCCACGACGCCCACGGCCAAGTGGTGGAGG
TCATCGACGCCACCGGCAAAAGCAAGACCATGCGCTGGACGGCCCTTGGGCAACTGAGCGAACACACCGATTGTTCCGGT
TACACCACACGGTTGAGCTATTGCGAGCGCGGGCTGTTGCTCAGCAGCACCGACGCACTGGGAGAGCGGACGCTTTTCAG
CTACGACGACCAGGGTCGGCTGCTGAGCAAGCAACTGCCGGACGGGCGCACCGAGCACTATCAGCGTGACGCAAGCGGAC
AGTTGATCGGCTATAGCGACCCGGCTGGACACACGACAAATTTCCAACACACCCTAAGCGGTCAACTGCGGGTGCGCACC
GACGCCCATGGCCGCCGGGTTGAGCTGAGCTACGACAACTACGGGCGCCTGCTGGCCCTGACCAATGAAAACGGTGAGCG
CTACCGGTTTGCCTGGGACGCCGCCGACCGCTTGACCGCCCAACACAGCCTGGACGGCAGCCTCAAGCGCTACGCCTACG
ACCCGCTGGACAACGTCACCCGCGTGGAAGCGCTCGCGGTGCCCGGCAGCACCGACCTGGACCTCTCGCCCCAAGCCCCC
ATCATTCATGAGCTGGAGCGCGATGCGATGGGGCGACTGGTGGCGAAAGTCACCGCAGACGGGCGCACCGAGTACCGCTA
TGACGCGCTCGACCAGGTCAACGCGATCACCTTCACCAGCCAGACCGGTGAAGTACAAAGCCTGGGCTTGCGTTACGACG
CCCTGGGGCAATTGATTACCGAGCAAGGCTGGGCGGGGAACCTCGAACATCGCTATGACGAACTGGGCAACCTGACCCAG
ACGCTGCTTCCCGACGGTCGTTGGCTGAACCGCCTGCACTACGGCAGCGGTCACCTGCACCAGATCAACCTCGACGGCCA
GGTCATCAGCGATTTCGAACGCGACCGCCTGCACCGCGAAGTGCTGCGCACCCAGGGGCGCCAGAGCACCCGCAGCGAAT
ACGACCGCAGTGGCCGCCTGCGGGCCCGTCAGCGGCGGCAACAGGGTCAGTCCACGCTGCTGCCGCCCGTGGCGCAATCA
CTGTTTGGTTATGACGCCAGCGATCAGCGGGTGGAGCGCTTCGACAGCCAGCCCGAAGCGTCCCATCGCCAATTGCTGCA
CTATGACGCCACCGGCCGCATTCTCGCCAGCCAGGACAACCTTCAAGGCCAGCGTGAAAGCTTCGCCTATGACCCGGCCG
CCAACCTGCTGGACGGTCTGGGCACAGGCCAGGTCGCGCATAACCGCTTGTTGACCTACCAGGACAAGCGCTACCGCTAT
GACGGTTTCGGTCGCATGGTGGAAAAACGCAGCGCCCGCCGTGGCGTCCAGCGTTTTCGCTACGATGCTGAACAACGCCT
GGTGGAAGTGCGCAACGATAACGGCTCGGTCGTAAAAATGACCTATGACCCGTTGGGTCGACGCATCGAAAAAGCCGAGT
ACGACCGCCACGCCACGCTGCTCAACCGCACCCGTTTCACCTGGGATGCGCTGCAACTTTTGCAGGAACACCGCGACAGC
CAGACCAGCCTCTACATCTACGCCGACGACAGCCACGAACCCCTGGCGAGGGTCGACGGCCTGGGCGAGCAACAGAAGGT
CCGTTATTACCACAACGACCTCAACGGCCTGCCCGAACAGCTCTCGGAAGCCGACGGCCACACACTCTGGCGAGCCCGTT
ACCAAGTGTGGGGCAACACCGCCGAAGAGCTGCGCGAACCGTATTACATCGAAGAGCAGAACCTGCGCTTCCAGGGCCAA
TACCTGGACCGCGAAACCGGGCTGCACTACAACACCCTGCGTTTCTACGACCCGGACATCGGCCGCTTCACCACACCGGA
CCCGATCGGCTTAGCCGGTGGGCTGAACCTCTACCAGTACGCGCCGAACCCGGTGAGTTGGATCGACCCCTTCGGGCTGA
TGAAATGCTCGACGCCGCCCAAGGGTCGCAAGGTCAACCGAACGGTGTATCGCTTTGAAGAGCCGGGGCGGATCAGCACG
ACTTGGACCGCGCACAAGTGGAACGTCGCCTCCAGGCACCGTTACACCGCCCCCGGCCTGGGCGGTGTCTATGGCGCCAA
CTCACGCAAGACAGCCATGGGCGAAGTCAATCACTGGGGCGTGGACCTGTCCACACGGGTACTGGTCAGCAAGAAAGTGC
AGCTCAACAACGTCCTGGACCTGACCCGGGCCGATGTGCGCAAACAATTGGGGGTCTCCCTCAAGAGCATTACCGGCGAC
AAGTACACCCAGACCCATCAAATCGGCGCCTGGGCCAAGGCTAATGGTTATGATGGGATCCTGGCGCCGTCGGCGCGAAA
CCCGACCGGCAGCAACTTGATTTCCTTTGCAGGTTTTTAA