Detailed information of component protein


Summary

Component ID T6CP004488
Component protein type TssC
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (499 a.a.); Nucleotide sequence (1497 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29725
Coordinate (Strand) 6702722..6704218 (+)
NCBI ID WP_003206925.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.7e-135 69..371
VipB_2 PF18945.2 3.9e-43 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 499 a.a.    

>T6CP004488 NC_015379:6702722-6704218 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssC]
MTDNTAREGVQNLGATEETSEFASLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSNDAIKSIESIIAAIDAKLTA
QVNQVIHHPDFQQLESAWRGLHYLVNNTESDEQLKIRVLNISKTDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPY
GCLVGDYYFDQSPPDVELLGELSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYI
GLTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHFGWCSRIRGVESGGEVENLPAHTF
PTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF
AHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVIVEEVEGNPGYYNSKFYLRPHYQLE
GLTVSLRLVSKLPSAKGA*

  Nucleotide sequence: 1497 bp    

>T6CP004488 NC_015379:6702722-6704218 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssC]
ATGACTGACAATACAGCTCGCGAAGGCGTGCAAAACCTGGGCGCAACCGAAGAAACCAGCGAGTTCGCGTCCCTGCTGCT
GCAAGAATTCAAACCCAAGACCGAGCGCGCCCGCGAAGCCGTCGAAACGGCCGTACGCACCCTGGCCGAACAGGCCCTGG
CGCAGACCGACCTGGTGTCCAATGACGCCATCAAGTCGATCGAATCGATCATCGCCGCCATCGACGCCAAGCTCACCGCC
CAGGTCAACCAGGTCATCCACCACCCCGACTTCCAGCAACTGGAAAGCGCCTGGCGTGGCCTGCACTACCTGGTCAACAA
CACCGAGTCCGATGAGCAGCTCAAGATCCGCGTGCTCAACATCTCCAAGACCGACCTGCACAAGACCCTGAAGAAATTCA
AGGGCACCGCGTGGGACCAGAGCCCGATCTTCAAGAAGATGTACGAAGAAGAATACGGCCAGTTCGGCGGCGAGCCTTAC
GGCTGCCTGGTAGGCGACTACTACTTCGACCAGTCGCCACCGGATGTCGAGCTGCTGGGCGAACTGTCGAAAGTCTGCGC
GGCCATGCACTCCCCGTTCATCGCTGCGGCATCGCCGACCGTGATGGGCATGGGCTCGTGGCAGGAACTGTCGAACCCGC
GCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGCTCGCTGCGTGAATCGGAAGACTCGCGCTACATC
GGCCTGACCATGCCACGCTTCCTGGCGCGCCTGCCGTACGGCGCCAAGACCGACCCGGTGGAAGCCTTCGCCTTCGAAGA
AAACACCGACGGTGCCGACAGCTCCAAGTACACCTGGGCCAACGCCGCCTACGCGATGGCGGTGAACATCAACCGTTCGT
TCAAACACTTCGGCTGGTGCTCGCGCATCCGTGGCGTGGAGTCCGGCGGTGAAGTGGAAAACCTGCCAGCCCACACCTTC
CCGACCGACGACGGTGGCGTGGACATGAAGTGCCCAACCGAAATCGCCATTTCGGACCGCCGTGAAGCGGAGCTGGCGAA
GAACGGTTTCATGCCGCTGCTGCACAAGAAAAACACCGACTTCGCCGCGTTCATCGGCGCCCAGTCCCTGCAGAAACCGG
CCGAATACGACGACCCGGACGCCACCGCCAACGCCAACCTGGCCGCGCGCCTGCCGTACCTGTTCGCCACTTGCCGTTTC
GCCCATTACCTCAAGTGCATCGTGCGCGACAAGATCGGTTCCTTCAAAGAGAAGGACGAGATGCAGCGCTGGTTGCAGGA
CTGGATCCTCAACTACGTCGACGGTGACCCGGCGCACTCCACCGAGACCACCAAGGCCCAGCACCCGTTGGCTGCAGCCG
AAGTGATCGTCGAAGAAGTCGAAGGCAACCCGGGGTACTACAACTCCAAGTTCTACCTGCGCCCGCACTACCAGCTCGAA
GGGCTGACCGTGTCGTTGCGCCTGGTATCGAAACTGCCTTCGGCCAAGGGCGCATAA