Detailed information of component protein


Summary

Component ID T6CP004483
Component protein type TssL
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (437 a.a.); Nucleotide sequence (1311 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29695
Coordinate (Strand) 6695896..6697206 (-)
NCBI ID WP_013694571.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 8.1e-68 54..256
OmpA PF00691.22 1.9e-15 326..424
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 437 a.a.    

>T6CP004483 NC_015379:c6697206-6695896 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssL]
MSNDDRTQFMPTPGGRGGDPFRPDAGRPQPTPAPAPLSMPAAPVLTGKAEGLNPLESAAGPLLALLTRLRNTIAHPAPAS
LRAQLLAYLRQFEERAEAAGVVRNDVLLARYALCTALDEAVLSTPWGGTSDWGKQSLLITVHNEAWGGEKVFQLLEHCLQ
SPRERLYLLELLYLCMCLGFEGRYRVMNDGRSQLEALRERTAAVIRSARGDYERELSPHWRGVTVARDRLAQFMPPWIAV
AIGAALLLALLFGLRMKLASDAEPVFKNIHFLGEIPVQTIDRPVVQPKVIERPRLAGFLADEIRANRIAVEDAVDRSVVT
IRGDELFASGSASIKDDFQPLMLRIADAVRKVKGQVLVTGHSDNRPIATLRFPSNWALSEARAQSVLQILSAKTGQPERF
SAEGRSDTEPLASNATTEGRARNRRVEITVLAEGVE*

  Nucleotide sequence: 1311 bp    

>T6CP004483 NC_015379:c6697206-6695896 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssL]
ATGAGTAACGACGATCGTACCCAGTTCATGCCGACGCCCGGTGGCCGTGGTGGAGATCCCTTCCGCCCGGACGCTGGCCG
GCCACAGCCGACGCCTGCGCCTGCACCGCTGTCGATGCCGGCCGCGCCGGTGCTGACCGGCAAGGCCGAGGGGCTCAACC
CGCTGGAAAGCGCCGCCGGCCCGCTGCTGGCGCTGCTGACGCGCCTGCGCAACACCATTGCCCACCCGGCGCCGGCCAGT
CTGCGCGCACAACTGCTGGCCTACCTGCGCCAGTTCGAAGAGCGTGCCGAGGCCGCCGGTGTGGTACGCAACGATGTGTT
GCTGGCCCGCTACGCCTTGTGTACCGCGCTGGACGAAGCGGTGTTGAGCACGCCGTGGGGCGGCACCAGCGATTGGGGCA
AGCAGAGCCTGTTGATCACCGTGCACAACGAAGCCTGGGGCGGTGAGAAGGTGTTCCAGTTGCTGGAGCATTGCCTGCAA
AGCCCGCGCGAGCGCCTGTATCTGCTGGAGCTTTTGTATCTGTGCATGTGCCTGGGTTTCGAAGGGCGCTATCGGGTGAT
GAACGACGGTCGCAGCCAACTGGAAGCGTTGCGTGAGCGCACCGCCGCCGTCATCCGCAGCGCCCGTGGCGACTACGAGC
GCGAGCTGTCGCCGCACTGGCGCGGTGTCACTGTGGCCCGTGATCGACTGGCGCAATTCATGCCGCCATGGATCGCCGTG
GCCATCGGTGCGGCGCTGTTGCTGGCGCTGCTGTTCGGCCTGCGCATGAAGCTGGCCTCCGATGCCGAGCCGGTGTTCAA
GAACATTCATTTCCTCGGTGAAATCCCGGTGCAGACCATCGACCGCCCTGTGGTACAACCGAAGGTGATCGAGCGCCCAC
GCCTGGCCGGTTTCCTCGCCGATGAAATCCGCGCCAACCGCATTGCCGTGGAAGACGCCGTCGACCGCTCGGTGGTGACC
ATCCGCGGCGATGAGCTGTTCGCCTCGGGCAGCGCCAGCATCAAGGACGATTTCCAGCCGCTGATGCTGCGCATCGCCGA
TGCGGTGCGCAAGGTCAAGGGCCAGGTCCTGGTCACCGGGCACAGCGATAATCGGCCGATCGCCACCCTCCGGTTCCCGT
CCAACTGGGCGTTGTCCGAAGCGCGGGCGCAATCGGTGCTGCAAATTCTCTCGGCCAAGACTGGCCAGCCCGAGCGCTTC
AGCGCCGAAGGCCGCAGCGACACCGAGCCGTTGGCATCCAACGCCACCACAGAGGGGCGTGCGCGCAACCGTCGGGTTGA
AATCACAGTATTGGCGGAGGGGGTCGAGTGA