Detailed information of component protein


Summary

Component ID T6CP011875
Component protein type FHA
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (514 a.a.); Nucleotide sequence (1542 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29710
Coordinate (Strand) 6699138..6700679 (-)
NCBI ID WP_013694572.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 5.7e-16 30..97
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 514 a.a.    

>T6CP011875 NC_015379:c6700679-6699138 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [FHA]
MPLCLTITSYHKITPGQCSEKSMDQGVMAIGRNSDNDWVLPDPERLVSGKHCVIQYKDGRYYLTDNSTNGVELVKAGVRL
RKGNSEPLQDGEVIRIGDYEIQARVDFSLPVTDSNPFAESPSSFEALMGRQGAAVHTPSPLHTPSPIQAAPPAHFQGGSA
MDTLPDLFDFLTPASVPPATQPDHVPAEQHNFRPPTPIPRPSPPPVVEPVIPPSASVIPDDWDPFSDKPVPVAVAPQPVA
PQPVPLPPVVEPVASPVPQAPLVDIFAEISAPPPAPVPEASVTRVEPPVAPPVAPVAQVASVAPVAPVAPVTPIEANQPD
LLQAFLRGAGLDQLRLDKANAEAQMESIGRSYRLMVEGLIDVLRARSSLKGEFRIQQTMIQPVENNPLKFAPNVDEALLL
LLRHGNQAFMAPDAAVRDSFDDLRAHQLAVMAGVEAAIKHLLGRFEPAQLEERMAKPGGLSGIFSGSRQAQYWQQFTELY
SNISREAQEDFQDLFGREFSRAYEEHSTRQRRR*

  Nucleotide sequence: 1542 bp    

>T6CP011875 NC_015379:c6700679-6699138 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [FHA]
ATGCCGCTGTGTTTGACTATCACTAGTTATCACAAGATCACCCCAGGCCAGTGTTCTGAAAAGTCCATGGATCAGGGGGT
GATGGCAATTGGCCGTAATTCCGATAATGACTGGGTATTGCCGGACCCTGAGCGCCTGGTTTCCGGCAAACATTGCGTTA
TCCAATACAAAGACGGGCGTTATTATTTAACTGATAACAGTACTAATGGTGTGGAATTGGTCAAGGCCGGTGTTCGCCTG
CGCAAGGGCAACAGCGAACCCCTGCAAGACGGCGAAGTGATCCGCATCGGTGATTATGAGATCCAGGCGCGCGTCGATTT
CAGCCTGCCGGTCACCGACAGCAACCCGTTTGCCGAATCGCCCAGCAGTTTCGAGGCCTTGATGGGGCGCCAGGGCGCAG
CGGTGCATACGCCGTCGCCGCTTCATACGCCATCGCCGATCCAAGCGGCTCCGCCTGCGCATTTCCAGGGCGGGTCGGCC
ATGGATACCCTGCCGGACCTGTTCGATTTCTTGACCCCAGCCAGTGTCCCGCCGGCCACCCAGCCTGACCATGTGCCGGC
CGAGCAGCACAACTTCCGCCCGCCGACGCCAATTCCCCGGCCGAGCCCACCGCCCGTGGTGGAGCCGGTGATACCGCCGT
CTGCCTCGGTGATTCCGGATGACTGGGATCCCTTCAGCGATAAGCCGGTTCCGGTGGCGGTAGCCCCGCAGCCCGTGGCC
CCGCAGCCGGTGCCGCTACCACCTGTGGTTGAGCCGGTCGCGTCGCCTGTCCCGCAGGCCCCGCTCGTCGACATTTTTGC
TGAAATCAGCGCACCGCCGCCGGCACCCGTGCCCGAAGCGTCGGTCACCCGCGTCGAGCCCCCGGTCGCACCTCCAGTTG
CTCCAGTTGCTCAAGTTGCTTCGGTCGCTCCAGTTGCTCCGGTCGCTCCAGTTACCCCGATCGAGGCCAACCAACCCGAT
TTGCTGCAAGCCTTCCTGCGCGGTGCCGGGCTCGATCAGTTGCGCCTGGACAAGGCCAACGCCGAAGCACAGATGGAAAG
CATCGGGCGCAGTTACCGGTTGATGGTCGAAGGCCTGATCGATGTCTTGCGCGCCCGCAGCAGCCTCAAGGGTGAGTTCC
GCATCCAGCAGACGATGATCCAGCCGGTGGAAAACAACCCGCTGAAATTCGCCCCCAATGTGGATGAAGCCTTGCTGTTG
CTGTTGCGCCACGGCAACCAGGCGTTCATGGCCCCGGACGCGGCGGTGCGTGACAGTTTCGATGACTTGCGGGCCCACCA
ACTGGCGGTGATGGCCGGCGTGGAAGCGGCCATCAAGCATTTGCTGGGGCGTTTCGAGCCGGCGCAACTGGAAGAGCGCA
TGGCCAAGCCCGGTGGGCTCTCGGGTATTTTCAGCGGCTCGCGACAGGCCCAGTACTGGCAGCAGTTTACCGAGCTCTAC
AGCAACATTTCCCGGGAAGCCCAGGAGGATTTCCAGGACCTGTTCGGTCGCGAGTTCAGCCGCGCCTACGAAGAACACAG
TACGCGACAGCGACGCCGCTAA