Detailed information of component protein


Summary

Component ID T6CP004487
Component protein type TssB
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29720
Coordinate (Strand) 6702213..6702719 (+)
NCBI ID WP_003206923.1
RefSeq NC_015379
Uniprot ID I4KLU9_PSEFL, G8Q716_PSEF3, A0A0F4XKI5_9PSED, A0A1K1T4U7_9PSED, A0A1I5DSZ3_9PSED, A0A1H7CVV9_9PSED, A0A0Q7A6F8_9PSED, A0A1V3S426_9PSED, A0A2M8STK5_9PSED, A0A2K4FRL9_9PSED, A0A0N9WYT7_PSEFL, A0A5Q0SEH6_9PSED, F2K711_PSEBN
KEGG ID pfe:PSF113_5798, pba:PSEBR_a5558
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.9e-57 11..161
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 169 a.a.    

>T6CP004487 NC_015379:6702213-6702719 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssB]
VAKQSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPLAAVADRKFLEIDVDNFDSRLKAMQPRV
AFHVPNELTGEGNLSLDLTFESMDDFSPAAVARKVDSLNKLLEARTQLANLLTYMDGKTGAEEIIMKAIKDPALLQALAS
APKPAQDQ*

  Nucleotide sequence: 507 bp    

>T6CP004487 NC_015379:6702213-6702719 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssB]
GTGGCGAAGCAAAGTTCTCAGAAATTCATCGCGCGCAACCGCGCGCCTCGAGTGCAGATCGAGTACGACGTCGAGCTCTA
CGGCGCCGAGAAGAAGGTCCAGTTGCCCTTCGTCATGGGCGTGATGGCCGACCTCGCCGGCAAGCCCGCCGAGCCTCTGG
CAGCGGTGGCTGATCGCAAGTTCCTCGAGATCGACGTCGATAACTTCGACTCGCGCCTCAAGGCCATGCAGCCGCGCGTG
GCGTTCCATGTGCCTAACGAACTGACCGGCGAAGGCAACCTGAGCCTGGACCTGACGTTCGAAAGCATGGACGACTTCAG
CCCGGCGGCCGTGGCCCGCAAGGTCGACTCGCTGAACAAGCTGCTCGAAGCGCGCACCCAGTTGGCCAACCTGCTGACCT
ACATGGACGGCAAGACCGGCGCCGAAGAAATCATCATGAAGGCGATCAAGGACCCAGCGCTGTTGCAGGCCCTGGCGAGC
GCGCCGAAGCCAGCACAGGACCAATGA