Detailed information of component protein


Summary

Component ID T6CP004486
Component protein type TssA
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (346 a.a.); Nucleotide sequence (1038 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29715
Coordinate (Strand) 6701094..6702131 (+)
NCBI ID WP_003206922.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 3.8e-32 7..130
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 346 a.a.    

>T6CP004486 NC_015379:6701094-6702131 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssA]
VDVPLLLAAVSATSPCGEDLEYDADFLRLERDSRGQPERSMGDSILPAEPPEWRSIQQQSLDLLQRSKDLRITHFLLQSS
LALEGLPGMARVLTLISELLKQYWAELHPRLDAEDDNDPTVRINALAGLTSDITIRLLRESILARSRTFGAVSLRAAANA
SGLQSFPDENLGAEQLAGALLDSDPEQLEITRAALLEARSAAEAIEQQVSDQVGSAQGVDLGPLKQPLKMALQILGQFAP
QSGDSALSDPVSDDSAAPTEYASAPSTPRNTSTSTVSGEINNRDDVLRSLDRILAYYTRHEPSSPLPVLLNRAKNLVHAD
FAAIVRNLIPDGMSQFENLRGPDSE*

  Nucleotide sequence: 1038 bp    

>T6CP004486 NC_015379:6701094-6702131 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssA]
GTGGATGTGCCTTTGTTGCTCGCCGCCGTTTCCGCGACTTCGCCGTGTGGTGAAGATTTGGAATATGACGCGGATTTCTT
GCGCCTGGAACGCGACTCCCGGGGCCAGCCCGAACGCAGCATGGGCGATTCGATCCTGCCTGCCGAACCTCCTGAGTGGC
GCAGCATCCAGCAGCAGAGCCTGGACTTGCTGCAACGCAGCAAAGACCTGCGCATCACCCATTTCCTGTTGCAAAGCTCC
CTGGCCCTCGAAGGCCTGCCGGGCATGGCCCGTGTGCTGACGCTGATCAGCGAACTGCTCAAGCAGTACTGGGCCGAGTT
GCATCCGCGCCTGGACGCCGAGGACGACAACGACCCCACCGTGCGCATCAATGCCCTCGCCGGCCTGACGTCCGACATCA
CCATTCGCTTGCTGCGCGAGAGCATCCTGGCCCGCTCGCGGACCTTCGGTGCCGTCAGCCTGCGCGCCGCCGCCAACGCC
AGCGGCCTGCAAAGTTTCCCGGATGAAAACCTCGGCGCCGAACAGCTCGCCGGGGCCCTGCTCGACAGCGACCCCGAGCA
GTTGGAAATCACCCGTGCCGCCCTGCTGGAAGCCCGCAGCGCCGCCGAAGCCATCGAGCAGCAAGTCAGCGACCAGGTCG
GTTCCGCCCAAGGCGTGGACCTTGGCCCGCTGAAGCAACCGCTGAAGATGGCCCTGCAGATTCTCGGCCAGTTCGCCCCG
CAGAGCGGCGACAGCGCCCTGTCCGATCCCGTCAGCGACGACAGCGCCGCGCCAACGGAATATGCCAGCGCGCCAAGCAC
GCCGCGCAACACCAGCACGAGCACCGTCAGCGGCGAAATCAACAACCGCGACGACGTGCTGCGCAGCCTGGACCGGATTC
TCGCTTACTACACCCGTCATGAGCCCTCCAGCCCGCTGCCGGTGCTGTTGAACCGGGCCAAGAATCTGGTGCACGCCGAC
TTCGCGGCCATTGTGCGCAACCTGATTCCCGACGGCATGAGTCAATTTGAAAACCTGCGCGGCCCAGACAGCGAATAA