Detailed information of component protein


Summary

Component ID T6CP004492
Component protein type TssG
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (351 a.a.); Nucleotide sequence (1053 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29755
Coordinate (Strand) 6708236..6709288 (+)
NCBI ID WP_003206938.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 9.7e-107 21..319
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 351 a.a.    

>T6CP004492 NC_015379:6708236-6709288 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssG]
MESQARTSSDPVSTLEAMHQEPWEYDFFQALRRIECESPELPRLGHSLRLADDPLRLGQRAECTFAPATLASVQPGSDGA
PARLEQFFFGLGGPNGPMPLHITEYVRERQRNNADSTSKRFLDVFHHRLLSLFYRAWAEARPTVSHDRPDDDYWSARLAA
LSGRGMPSLLNQGLIPDTAKLHYSGHLAAQTRYPDGLKAILGEYFGLPVEIEEYVGQWLELPERSRVGVSAHQLGVDFCL
GRFVWDRQHKFRIRLGPLKLVDYMGMLPGSQPFNELVAWVAEYLGHELDWDLNLVLEQPEVPALQLNGRFRLGFNTWLGR
PETDANDLILARHYAEQANTSQTSRSHEHG*

  Nucleotide sequence: 1053 bp    

>T6CP004492 NC_015379:6708236-6709288 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssG]
ATGGAAAGCCAAGCCCGGACGTCGTCCGACCCTGTGAGTACCCTGGAAGCGATGCACCAGGAACCCTGGGAATACGATTT
CTTCCAGGCGTTGCGGCGCATCGAGTGCGAATCCCCCGAGCTGCCGCGCCTGGGCCATTCCCTGCGCCTGGCCGACGACC
CGCTGCGCCTCGGGCAACGGGCCGAATGCACCTTCGCCCCGGCCACCCTTGCCTCGGTGCAACCGGGCAGCGACGGTGCG
CCGGCACGCCTGGAGCAATTTTTCTTCGGCCTCGGCGGACCCAACGGCCCGATGCCGCTGCACATCACCGAATACGTGCG
CGAACGCCAGCGCAACAACGCCGACAGCACCAGCAAGCGCTTCCTCGATGTGTTTCACCATCGCCTGCTCAGCCTGTTTT
ATCGGGCCTGGGCCGAAGCGCGGCCGACGGTCAGCCACGATCGCCCGGACGATGACTATTGGTCGGCGCGCCTGGCGGCA
CTGAGCGGTCGGGGCATGCCCAGCCTGCTCAACCAGGGGTTGATTCCCGACACGGCGAAGCTGCACTACAGCGGCCACCT
GGCAGCGCAAACCCGCTACCCGGACGGTTTGAAGGCAATCCTCGGCGAGTACTTCGGCCTTCCGGTGGAGATCGAAGAAT
ACGTCGGCCAATGGCTGGAACTGCCCGAACGCAGCCGCGTCGGGGTCAGCGCTCATCAATTGGGCGTGGACTTCTGCCTG
GGCCGCTTCGTGTGGGATCGCCAGCACAAATTCCGCATTCGCCTGGGGCCACTCAAGCTCGTTGACTACATGGGCATGCT
GCCTGGCAGCCAACCGTTCAACGAGCTGGTGGCCTGGGTCGCCGAATACCTGGGCCATGAACTGGACTGGGACCTGAACC
TGGTCCTGGAACAGCCCGAAGTCCCGGCATTGCAACTCAATGGGCGTTTCCGCCTGGGTTTCAATACCTGGCTGGGCCGC
CCCGAAACAGATGCCAACGATTTAATACTGGCCCGGCATTACGCCGAACAGGCCAACACCTCACAGACCTCAAGGAGCCA
TGAGCATGGGTGA