Detailed information of component protein


Summary

Component ID T6CP004494
Component protein type TssI
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (646 a.a.); Nucleotide sequence (1938 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29765
Coordinate (Strand) 6712142..6714079 (+)
NCBI ID WP_003206941.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.4e-106 30..329
Phage_base_V PF04717.14 1.7e-14 386..453
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 646 a.a.    

>T6CP004494 NC_015379:6712142-6714079 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssI]
MLFNQASRLAKITSPLGPEVLLLKDMGGGEELGRLFNYELQLHSLDNAIDLNQVLGKPMCVSLQLDGGGERYFHGIVARF
SQNVDQGQFASYQATLRPWFWLLTRTSDCRIFQNLTIPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSFDFVSR
LMEQEGIYYFFRHEQGRHVLVLADAYGAHTTAPGYGSVPYYPKNEQQRERDHIHDWHLAQEVQPGSLELNDYDFQRPSAR
IDVRSAMPRPHTAGDYPLYDYPGTYVQSQDGEHYARTRIEALQTQHEQVELAGNARGLGSGHLFSLTGFSRQDQNREYLI
VGARYYLSQESGETGGGAPTAQFESSLTCIDAQQSYRPLPITHRPIVKGPQTALVVGPKGEEIWTDQFGRVKVHFYWDRH
DQSNENSSCWIRVSQAWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPANATQSGMKSRSSKGG
TPANFNEIRMEDKKGAEQLYIHAERNQDIVVEVDESHSVGHDRNKSIGHNETVTIGNNRLRIVKQEDILSVGQRKTDSIS
QSYVIEVGENLRLVCGESILELNASGQINLTGVQISFYASGDAEFNTGGVLHLNNGGGPGATPDGQGVKGSIDANIQAAF
PAPKG*

  Nucleotide sequence: 1938 bp    

>T6CP004494 NC_015379:6712142-6714079 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssI]
ATGTTATTCAACCAAGCCTCACGCCTGGCCAAGATCACCAGCCCCCTGGGACCTGAGGTACTGCTGCTCAAGGACATGGG
CGGCGGCGAAGAACTGGGGCGGCTGTTCAACTATGAGTTGCAGCTGCACTCGCTGGATAACGCCATCGACCTCAATCAGG
TGCTCGGCAAGCCCATGTGCGTGAGCCTGCAACTCGATGGCGGTGGCGAGCGTTATTTCCATGGCATCGTGGCCCGTTTC
AGCCAGAACGTCGACCAGGGCCAGTTCGCCAGTTACCAGGCCACCCTGCGCCCGTGGTTTTGGCTGCTGACCCGTACCTC
CGATTGCCGGATTTTCCAGAACCTCACCATCCCGCAGATCATCAAGCAGGTGTTCCGCGACTTGGGCTTTTCCGATTTCG
AAGACGCCCTGAGCCGGCCTTATCGCGAGTGGGAATACTGCGTGCAGTATCGCGAGACCAGTTTCGACTTCGTCAGCCGC
TTGATGGAGCAGGAAGGGATCTACTACTTCTTCCGCCATGAGCAAGGTCGACATGTGCTGGTGCTGGCCGACGCTTATGG
AGCCCACACCACGGCGCCCGGCTACGGCTCGGTGCCCTACTACCCCAAGAACGAGCAGCAGCGCGAGCGTGACCACATAC
ACGACTGGCACCTGGCCCAGGAAGTCCAGCCCGGCTCGCTGGAGCTCAACGACTACGACTTCCAACGCCCCAGCGCACGC
ATCGACGTACGCTCGGCCATGCCCCGCCCACACACTGCCGGCGACTATCCCCTGTACGACTACCCTGGCACCTACGTGCA
GAGCCAGGACGGCGAACACTACGCCCGCACCCGCATCGAAGCCTTGCAGACCCAGCACGAACAGGTCGAACTGGCCGGCA
ACGCCCGCGGCTTGGGTTCGGGGCACCTGTTCAGCCTCACCGGCTTCAGCCGCCAGGACCAGAACCGCGAATACCTGATC
GTCGGCGCCCGCTACTACCTCTCCCAGGAAAGCGGCGAAACCGGCGGCGGCGCGCCGACAGCACAGTTCGAAAGCAGCCT
GACCTGCATCGACGCCCAGCAAAGCTATCGGCCGCTGCCCATCACCCATCGCCCTATCGTCAAGGGCCCGCAGACTGCCT
TAGTGGTGGGTCCCAAGGGCGAGGAAATCTGGACCGATCAGTTCGGCCGAGTGAAGGTGCACTTCTATTGGGATCGGCAC
GACCAGTCCAACGAAAACAGCTCGTGCTGGATTCGCGTGTCGCAGGCATGGGCCGGGAAAAACTGGGGCTCGATGCAGAT
CCCGCGCATTGGCCAGGAAGTGATCGTCAGTTTCCTCGAAGGCGACCCGGATCGGCCGATCATCACCGGTCGCGTCTACA
ATGCCGAACAGACCGTGCCCTATGACTTGCCCGCCAATGCCACCCAGAGCGGGATGAAAAGCCGTTCGAGCAAGGGCGGC
ACGCCGGCGAATTTCAACGAAATCCGCATGGAAGACAAGAAAGGCGCCGAGCAACTGTACATCCACGCCGAGCGTAACCA
GGACATCGTGGTCGAGGTGGATGAAAGCCACTCGGTGGGCCACGACCGCAACAAGAGCATCGGCCACAACGAGACGGTGA
CCATCGGCAACAACCGCCTGCGCATCGTCAAGCAGGAGGACATCCTCTCCGTCGGCCAGCGCAAGACCGACAGCATCAGC
CAGAGCTACGTGATTGAAGTGGGCGAAAACCTGCGCCTGGTGTGCGGCGAAAGCATCCTGGAGCTCAACGCCAGCGGCCA
GATCAACCTGACCGGCGTACAGATCAGCTTCTACGCCAGCGGCGATGCCGAGTTCAACACCGGCGGCGTGCTGCACCTGA
ACAACGGCGGCGGCCCCGGAGCCACGCCGGACGGCCAGGGCGTCAAGGGCAGCATCGATGCCAACATCCAAGCCGCGTTC
CCTGCACCCAAGGGCTAA