Detailed information of component protein


Summary

Component ID T6CP004484
Component protein type TssK
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29700
Coordinate (Strand) 6697213..6698547 (-)
NCBI ID WP_003206916.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.4e-155 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 445 a.a.    

>T6CP004484 NC_015379:c6698547-6697213 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssK]
MSWNNRVVWSEGMFIGTQHFQQHDRYLENLIDARSRPLSAGAWGFSELLIDQGLLAQGKLAIISARGLLPDGTPFNIPQD
DLAPTPLNVDDNLRDGLVYLALPLKRAGARDTVDEGEDLGAARYVSQVCEVRDDNAPFENRAPVALGSRALRLLTEQDGI
GDYAAIGVVRIKEKRADRALVLDDAYIPPLLDVIASKPLAAFRSELLGLLHQRGEALAGRVVASGAGGASEIADFMLLQL
VNRAQPLIQHLSQLSPLHPERFYSELVSLAGEFSTFTASGRRPQQYPPYQHDDLALSYAPVMQALREALSMLIDSKATPI
PIVEKAYGIHVAMLADKTLLDSASFILVVRADVPAETLRGRFGQQSKVGSVEHIRDLVNLQLPGIGLLPLPVAPRQLPYH
AGSTYYELDRGSDHWQQLSNSGGFAFHIAGQFPGLNLAFWAIRG*

  Nucleotide sequence: 1335 bp    

>T6CP004484 NC_015379:c6698547-6697213 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssK]
ATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATTGGAACGCAGCACTTCCAACAGCATGACCGTTACCT
GGAAAACCTCATCGACGCACGCAGCCGCCCGTTGTCGGCCGGCGCCTGGGGTTTTTCCGAATTGCTGATCGACCAGGGCC
TGCTGGCCCAGGGCAAGCTGGCGATCATCTCGGCGCGCGGCCTGTTGCCGGACGGTACGCCCTTCAACATTCCCCAGGAT
GACCTGGCACCAACCCCGCTGAACGTCGACGACAACCTGCGCGATGGCCTGGTGTACCTGGCCTTGCCGCTCAAGCGCGC
CGGCGCCCGGGACACCGTGGACGAAGGCGAAGACCTCGGCGCTGCGCGTTATGTGAGCCAGGTGTGCGAAGTGCGTGACG
ACAACGCACCGTTCGAAAACCGCGCACCGGTGGCCCTCGGCTCACGGGCGCTGCGGCTGTTGACCGAACAGGATGGCATC
GGCGACTACGCCGCCATCGGCGTGGTTCGCATCAAGGAAAAGCGCGCCGACCGTGCATTGGTACTCGACGACGCCTACAT
CCCGCCGCTGTTGGATGTGATCGCCTCCAAGCCACTGGCGGCGTTTCGCAGCGAACTGCTGGGCCTGCTGCATCAACGCG
GCGAAGCCCTGGCCGGGCGGGTAGTGGCGTCCGGCGCCGGTGGCGCCTCGGAAATTGCCGATTTCATGCTGTTGCAACTG
GTCAACCGCGCCCAGCCGCTGATCCAGCACCTGAGCCAGTTGAGCCCGCTGCATCCCGAGCGTTTCTACAGCGAGCTGGT
GAGCCTGGCCGGGGAGTTCTCCACGTTCACCGCGTCCGGGCGCCGACCGCAGCAATACCCGCCTTACCAGCACGATGACC
TGGCGCTCAGCTACGCGCCCGTGATGCAGGCCCTGCGCGAAGCCCTGTCGATGCTGATCGACAGCAAGGCGACGCCAATT
CCGATTGTCGAGAAAGCCTACGGCATCCACGTGGCGATGCTGGCCGACAAGACCCTGCTCGACAGTGCCAGTTTCATCCT
GGTGGTGCGCGCCGACGTGCCGGCCGAGACCCTGCGTGGCCGCTTCGGCCAGCAGAGCAAGGTCGGTTCGGTGGAGCACA
TCCGCGACCTGGTCAACCTGCAACTGCCGGGCATCGGCCTGCTGCCGTTGCCGGTGGCGCCACGGCAGTTGCCGTACCAC
GCCGGCTCCACTTACTACGAGCTCGACCGGGGCAGCGATCACTGGCAGCAACTGAGCAACTCCGGCGGCTTTGCGTTCCA
CATCGCCGGCCAGTTCCCAGGGCTGAACCTGGCCTTCTGGGCGATCCGAGGATAA