Detailed information of component protein


Summary

Component ID T6CP012503
Component protein type TagF
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (218 a.a.); Nucleotide sequence (654 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29685
Coordinate (Strand) 6691749..6692402 (-)
NCBI ID WP_013694569.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 1.3e-47 5..139
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 218 a.a.    

>T6CP012503 NC_015379:c6692402-6691749 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TagF]
MRTPGFYGKLASRGDFVSRGLPQSFIGPWDSWLAAGLLASQTSLGERWLDAYLVSPLWRFMVAPGVCGPDAAVGVVMPSI
DRVGRYFPLTVAMLLEPDADPASVVGGADEWFERVENLLLSTLSVEASFEAFNEQLETLGSPMYLPRTPSSRFASLHRFD
ATDPQRRMSALAEAACEGASLWWGQGSERIAPGLMRCQGLPAAADFAQFLLGQEGVV*

  Nucleotide sequence: 654 bp    

>T6CP012503 NC_015379:c6692402-6691749 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TagF]
ATGAGGACACCGGGCTTCTATGGAAAGTTGGCCAGCCGCGGCGATTTCGTCAGCCGTGGCTTGCCTCAGAGTTTTATCGG
CCCGTGGGATTCGTGGTTGGCGGCGGGTTTGCTCGCCAGCCAGACCAGCCTCGGCGAGCGCTGGCTGGACGCCTATCTGG
TCAGCCCGCTGTGGCGCTTCATGGTCGCACCGGGTGTGTGTGGCCCGGACGCCGCGGTCGGCGTGGTGATGCCGAGCATT
GACCGGGTCGGCCGTTATTTCCCGCTGACTGTCGCGATGTTGCTGGAGCCCGACGCGGACCCGGCGTCGGTGGTGGGCGG
TGCGGACGAGTGGTTTGAGCGGGTCGAGAACCTGTTGCTGAGCACGTTGAGTGTGGAGGCCAGTTTCGAGGCGTTCAACG
AACAGCTGGAGACCCTGGGCAGCCCGATGTACCTGCCGCGCACGCCGAGCAGCCGCTTTGCCAGCCTGCATCGCTTCGAT
GCCACTGACCCGCAACGGCGCATGAGCGCCCTCGCCGAGGCAGCCTGCGAAGGCGCGAGCCTGTGGTGGGGCCAGGGATC
GGAGCGCATTGCCCCGGGGTTGATGCGCTGCCAGGGACTGCCGGCGGCGGCTGATTTTGCGCAATTTTTGCTCGGCCAAG
AAGGTGTTGTGTAG