Detailed information of component protein


Summary

Component ID T6CP012501
Component protein type PpkA
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (1029 a.a.); Nucleotide sequence (3087 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29675
Coordinate (Strand) 6687922..6691008 (-)
NCBI ID WP_196233452.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 6.2e-47 8..249
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1029 a.a.    

>T6CP012501 NC_015379:c6691008-6687922 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [PpkA]
MNIVIPGYDIEGPIGEGAMASVYLATQRSLERKVALKVMAAALAADPTFCERFLREGKTLARLSHPHTVTIHDIGNVGEL
YYMAMEYLPNGTLKERIAAGLTPEQGLTYIRQIASALGYAHGLGLVHRDVKPANILFRADGTAVLSDFGIAKSLDDRTQF
TQAGFAVGTPSYMSPEQARGQDIDGRADLYALGVVLYEILVGKLPYTGNDALSTALAHLTEPLPELPVHHGRYQDVLRKL
LAKDPAERFPDAAALLRALDNLPDESAEATLIRPLSLQLPETPKPVDDLAGLTPMSIDIPSGPAYSPPPPQSQPKPVAPP
IKPPVQSSVSEQRKGPVFALAAVAVAVALALGGAGYWWLSGDDGKDVKTPVATTTSVKPPEVKPPKTPEVPAVKPPVAPP
AQPPVATEADGGQRPLLMAGKKTLFQRVLSKPGAKLADAPGAAPGKALPAFSVLYVYQRKDVDGGSWVRVGAATDGRSDG
WLPAAQVSDWKQSLVLKFTERSGRAPVMFLRQPGDVEKLLANPSAAKNVLLKAQQSPQDDQQVLALEPAASAVPQSQFYL
LPIFDSRESLDENGQPVQLLNVASIDPGNTPKASSNTPITTANADAFRTAVVLVVDTTVSMQPYIDQVRDVVHELQTRIA
ERGELDSVSFGMVGFRSSIKKTPGLEYVAKTLITLEQGRDPQRFMELARQVKASTVSSHSFNEDAFAGVMEAVEGMDWSG
YGGRLILLVTDAGALRKNDPFAATQMNEAEVRQAALGKQIKIYALHLLSDAGKKTHAGAQSQYRTLTADANPQIGDLYIP
VPGADVRKFGERVDEIGSVFADLVHQVRSNKAQSVPLLSAAPSLADKSAAVGYAMHMDFLGRKSASQAPQLVSAWTADRD
LTNPALPAFQVCVMLTKLQLNDLQQSLKLIVDAARKTQSSPKDFFQEIASASAYMSRDPSALRKGGNLADGGILGEYLEG
LPYRSKSLNMTQDLWLSLSVAEQEDFIDELDSKIRLYETFHNDLANWVRFGDAEPGDALYRVPLSTLP*

  Nucleotide sequence: 3087 bp    

>T6CP012501 NC_015379:c6691008-6687922 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [PpkA]
TTGAACATTGTCATCCCCGGTTACGACATCGAAGGGCCGATCGGCGAAGGCGCGATGGCCAGCGTGTACCTGGCGACCCA
GCGTTCGCTGGAACGCAAGGTGGCGTTGAAAGTCATGGCCGCCGCACTGGCGGCCGACCCGACCTTCTGCGAGCGTTTTT
TGCGCGAAGGCAAGACGCTGGCGCGCCTGTCGCACCCGCACACCGTCACCATCCATGACATCGGCAACGTCGGTGAGCTG
TATTACATGGCGATGGAGTACCTGCCCAACGGCACGCTCAAGGAACGCATCGCCGCGGGCCTGACGCCGGAGCAGGGCCT
GACCTACATCCGCCAGATCGCCTCGGCCCTGGGTTATGCCCACGGGCTGGGCCTGGTCCACCGTGACGTCAAGCCGGCCA
ACATCCTGTTCCGCGCCGATGGCACGGCGGTGCTCTCGGACTTCGGCATCGCCAAGTCCCTGGACGACCGCACCCAGTTC
ACCCAGGCCGGCTTTGCCGTCGGCACGCCCAGCTACATGAGCCCGGAACAGGCCCGTGGCCAAGACATCGACGGCCGCGC
CGACCTGTATGCCCTGGGCGTGGTGCTCTACGAAATCCTTGTTGGCAAACTGCCGTATACCGGCAACGACGCACTGTCCA
CGGCCCTGGCACACCTGACCGAACCGTTGCCGGAACTGCCGGTGCACCATGGCCGTTACCAGGACGTGTTGCGCAAGCTG
CTGGCGAAGGATCCGGCGGAGCGTTTCCCGGATGCGGCGGCGTTGCTGCGGGCGTTGGATAACCTGCCAGACGAGTCGGC
GGAAGCGACGCTGATCCGACCGTTGTCGTTGCAACTGCCGGAGACGCCGAAACCGGTGGATGACCTGGCGGGTTTGACGC
CCATGTCCATCGACATTCCCAGCGGCCCGGCTTATTCACCACCGCCGCCACAATCGCAGCCCAAGCCCGTTGCGCCGCCG
ATAAAACCGCCGGTTCAATCCTCGGTGTCGGAGCAACGCAAGGGGCCGGTGTTCGCCCTGGCTGCCGTTGCGGTCGCCGT
GGCGCTGGCGTTGGGTGGCGCGGGTTATTGGTGGTTGTCCGGTGATGACGGCAAAGACGTGAAGACGCCAGTGGCCACGA
CCACCTCGGTCAAGCCACCGGAAGTGAAGCCGCCGAAGACCCCTGAAGTGCCAGCGGTCAAACCACCCGTTGCCCCTCCG
GCTCAGCCACCCGTGGCGACCGAGGCCGATGGTGGCCAGCGTCCGCTGTTGATGGCCGGCAAGAAAACCCTGTTCCAGCG
CGTGCTCAGCAAACCGGGGGCGAAGCTCGCCGATGCGCCGGGCGCCGCACCGGGCAAGGCGCTGCCGGCGTTTTCCGTGC
TGTACGTGTATCAGCGCAAGGACGTCGACGGCGGTTCGTGGGTGCGGGTCGGCGCCGCCACTGACGGGCGCAGCGACGGC
TGGTTGCCCGCCGCCCAGGTCAGCGACTGGAAGCAGAGCCTGGTGCTCAAGTTCACCGAACGTTCCGGCCGTGCGCCGGT
GATGTTCCTGCGTCAGCCTGGCGACGTGGAAAAGCTCTTGGCTAACCCATCGGCCGCCAAGAACGTGTTGCTCAAGGCCC
AGCAGAGCCCGCAGGACGACCAGCAAGTGCTGGCCCTGGAGCCGGCCGCCAGCGCCGTGCCGCAGAGCCAGTTCTATCTG
TTGCCGATCTTCGATTCCCGCGAGAGCCTCGATGAAAACGGTCAGCCGGTGCAGTTGCTGAATGTCGCGTCGATCGATCC
TGGCAATACCCCGAAGGCGTCGAGCAACACGCCGATCACCACCGCCAATGCCGACGCGTTCCGTACCGCCGTGGTGCTTG
TGGTGGACACCACCGTGTCGATGCAGCCCTACATCGACCAGGTGCGCGACGTGGTCCACGAACTGCAAACCCGCATCGCC
GAGCGCGGCGAGTTGGATAGTGTCAGCTTCGGCATGGTGGGTTTCCGCAGCAGCATCAAGAAGACTCCAGGCCTGGAATA
CGTCGCCAAGACCTTGATCACCCTGGAGCAGGGGCGCGACCCGCAACGCTTCATGGAGCTGGCGCGTCAGGTCAAGGCAT
CGACGGTGTCGAGCCATTCGTTCAACGAAGATGCGTTTGCCGGGGTCATGGAAGCCGTCGAAGGCATGGACTGGTCCGGT
TACGGCGGGCGTTTGATCCTGTTGGTCACCGACGCCGGGGCCCTGCGCAAGAACGATCCATTTGCCGCCACGCAAATGAA
CGAGGCCGAAGTGCGCCAGGCCGCACTGGGCAAGCAGATCAAGATCTACGCCTTGCACCTGCTCAGCGACGCCGGCAAGA
AAACCCATGCCGGCGCTCAGAGCCAGTACCGCACCCTGACCGCCGACGCCAACCCGCAGATCGGTGACCTGTACATTCCG
GTGCCGGGCGCCGACGTGCGCAAGTTCGGCGAGCGCGTCGACGAGATCGGTTCGGTGTTTGCCGACCTGGTGCATCAGGT
GCGCAGCAACAAGGCGCAAAGCGTGCCGCTGTTGAGTGCCGCGCCGAGCCTGGCCGACAAGTCGGCCGCGGTCGGCTACG
CGATGCACATGGACTTTTTGGGGCGTAAATCCGCCAGCCAGGCGCCGCAACTGGTCAGCGCCTGGACCGCCGACCGCGAC
CTGACCAACCCGGCACTGCCGGCGTTCCAGGTCTGCGTGATGCTGACCAAGCTGCAACTCAACGACCTGCAGCAGTCGCT
GAAGCTGATCGTCGACGCGGCCCGCAAGACCCAGAGTTCGCCCAAGGATTTCTTCCAGGAAATCGCCAGCGCCAGTGCCT
ACATGAGCCGCGACCCGTCGGCCCTGCGCAAGGGCGGCAACTTGGCCGACGGCGGGATTCTCGGCGAGTACCTCGAAGGG
CTGCCGTACCGCAGCAAGTCGCTGAACATGACCCAGGATCTGTGGCTGTCCTTGAGCGTGGCCGAGCAGGAAGATTTCAT
CGACGAGCTGGATTCGAAAATCCGCCTCTACGAAACCTTCCACAACGACCTCGCCAACTGGGTGCGCTTCGGCGATGCCG
AGCCGGGTGACGCCTTGTACCGCGTTCCATTGTCGACGCTGCCGTGA