SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP004489
Component protein type	TssD
T6SS ID (Type)	T6SS00432 (Type i3)
Strain	Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon	chromosome
Sequence	Protein sequence (163 a.a.); Nucleotide sequence (489 bp)
Reference	[1] Ortet P, Barakat M, Lalaouna D, et al. Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum. J Bacteriol. 2011 Jun;193(12):3146. doi: 10.1128/JB.00411-11. Epub 2011 Apr 22. PMID: 21515771 [2] Lalaouna D, Fochesato S, Sanchez L, et al. Phenotypic switching in Pseudomonas brassicacearum involves GacS- and GacA-dependent Rsm small RNAs. Appl Environ Microbiol. 2012 Mar;78(6):1658-65. doi: 10.1128/AEM.06769-11. Epub 2012 Jan 13. PMID: 22247157

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	PSEBR_RS29730
Coordinate (Strand)	6704439..6704927 (+)
NCBI ID	WP_003206927.1
RefSeq	NC_015379
Uniprot ID	I4KMA9_PSEFL, G8Q718_PSEF3, A0A0F4XLT1_9PSED, A0A1K1T4Y7_9PSED, A0A1H7CWX2_9PSED, A0A2T0ZTE8_9PSED, A0A1G4QEF5_9PSED, A0A0Q7AIP3_9PSED, A0A2V1YGA9_9PSED, A0A2M8STJ9_9PSED, A0A6N1CGQ3_9PSED, A0A165ZKB8_PSEFL, A0A5Q0SF75_9PSED, F2K713_PSEBN
KEGG ID	pba:PSEBR_a5560, pfe:PSF113_5800
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	3.8e-43	6..136

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 163 a.a.

						>T6CP004489 NC_015379:6704439-6704927 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssD]
MAVDIFIKIGDIKGESMDKAHKDEIDVLNWSWGMSQSGNMHVGSGGGAGKVNVQDLSLTKYVDKASPNLMMHCASGKHID
KVKLTVRKAGGESQVEYMIINLEEVLVTSLSTGGSGGDDRLTENVTLNFAKVLVDYQPQKADGTKEGGPVKFGWNIRQNV
KV*					

Nucleotide sequence: 489 bp

						>T6CP004489 NC_015379:6704439-6704927 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssD]
ATGGCTGTTGATATTTTCATCAAGATTGGCGACATCAAGGGCGAGTCCATGGACAAGGCCCACAAGGACGAGATCGATGT
CCTGAACTGGAGCTGGGGCATGTCCCAGTCCGGCAACATGCACGTGGGCAGCGGCGGTGGTGCGGGCAAGGTCAACGTCC
AGGACCTGTCCCTGACCAAGTACGTCGACAAGGCGTCGCCGAACCTGATGATGCACTGCGCCAGCGGCAAGCACATCGAC
AAGGTCAAGCTGACCGTGCGCAAGGCCGGCGGTGAAAGCCAGGTCGAGTACATGATCATCAACCTGGAAGAAGTGCTGGT
CACTTCCCTGAGCACCGGCGGCTCGGGCGGCGATGATCGCCTGACTGAAAACGTCACCCTGAACTTCGCCAAGGTGCTGG
TGGACTACCAGCCACAGAAAGCCGACGGCACCAAGGAAGGCGGTCCGGTCAAGTTCGGCTGGAACATCCGTCAGAACGTC
AAGGTGTAA					