Detailed information of component protein


Summary

Component ID T6CP004491
Component protein type TssF
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (620 a.a.); Nucleotide sequence (1860 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29750
Coordinate (Strand) 6706413..6708272 (+)
NCBI ID WP_003206936.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 4.7e-234 1..616
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 620 a.a.    

>T6CP004491 NC_015379:6706413-6708272 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssF]
MNPRLLELYNQELHHVRESAAEFAKEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARVQLKLDAEYPTFTHNLLEIAY
PHYLAPTPSMTVVQLQADPDEGSLSSGFPLPRDTVLRAALGRETQTCCEYRTAHAVTLWPLQVSQAEYFGNPSAVLGRLA
ASEPKAKAGLRLTLRTGAELPFNSLALDNLPLYLSGADEQPFRLYEQLLGNACAVFARKPGGDWVERLPQDALRSRGFDD
ADAALPVVPRAFQGYRLLQEYFALPHRFLFVDFTQLSRAVKRCDGQELELIVLFDRHDPSLEGSVGASQFLPFCTPAINL
FPKRLDRIHLSDRVNEHHVIADRTRPMDFEVHSLNGLTGHGTGPEQPFLPFYAVRDPSRYGRDQAYYTVRREPRVLSSDQ
RRNGPRSTYIGSETFVSLVDSQQAPYRHDLRQLGVTALCTNRDLPLFMSVGNGKTDFTLADSAPVGAVRCVAGPSRPRAS
HAHDAKAWRLISQLSLNYLSLSEQGQGAAALRELLRLYGDSNDAALQLQIEGLREVSSKACTRRLPMPGPIVFGRGLEIT
LEFDENAFRGTGVFLLGAVFERFLARYVSINSFTETVIRTTERGEIMRWKAKPGRRPTL*

  Nucleotide sequence: 1860 bp    

>T6CP004491 NC_015379:6706413-6708272 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssF]
ATGAATCCACGCCTGCTGGAACTGTACAACCAGGAACTGCACCACGTGCGCGAAAGCGCGGCGGAGTTCGCCAAGGAATA
CCCGAAGATCGCCAGTCGGCTGACGTTGTCCGGCATGGACTGCGCCGACCCGTATGTCGAGCGCCTGCTGGAAGGCTTCG
CCTACCTGACGGCACGAGTGCAGCTCAAGCTCGACGCCGAGTACCCGACCTTCACCCACAACCTGCTGGAAATCGCCTAC
CCGCATTACCTGGCGCCGACGCCGTCGATGACGGTGGTGCAATTGCAGGCCGACCCGGACGAAGGCTCGCTGAGCAGTGG
TTTCCCGCTGCCGCGCGATACGGTCCTGCGTGCCGCCCTGGGGCGTGAAACCCAGACCTGCTGCGAGTACCGCACCGCCC
ACGCGGTGACGTTGTGGCCGTTGCAGGTCAGCCAGGCCGAGTACTTCGGCAACCCGTCCGCCGTGCTCGGGCGCCTGGCC
GCCAGCGAACCGAAAGCCAAGGCCGGCCTGCGCCTGACCCTGCGCACCGGCGCCGAACTGCCGTTCAACAGCCTGGCCCT
GGACAACCTGCCGCTGTACTTGAGCGGTGCCGACGAACAGCCCTTCCGCCTCTACGAACAACTGCTGGGCAATGCCTGCG
CGGTGTTCGCCCGCAAGCCCGGCGGCGACTGGGTGGAGCGGCTGCCGCAGGATGCGTTGCGCTCGCGCGGCTTCGACGAT
GCCGACGCCGCGCTGCCGGTGGTGCCGCGGGCCTTCCAGGGCTATCGCCTGTTGCAGGAATATTTCGCCCTGCCCCACCG
TTTCCTGTTCGTCGACTTCACCCAGCTGAGCCGCGCGGTCAAGCGTTGCGACGGCCAGGAGCTGGAGCTGATCGTGCTGT
TCGACCGTCACGATCCGAGCCTGGAAGGCAGCGTCGGCGCTTCGCAGTTCCTGCCGTTCTGCACCCCGGCCATCAACCTG
TTTCCCAAGCGCCTGGACCGCATTCACTTGTCGGATCGGGTCAACGAACACCACGTGATCGCCGACCGTACCCGGCCGAT
GGATTTCGAAGTGCATTCGCTGAACGGCCTCACCGGCCACGGCACCGGGCCGGAGCAACCGTTCCTGCCGTTCTACGCCG
TACGCGATCCGTCCCGTTATGGCCGCGACCAGGCCTATTACACCGTGCGGCGCGAACCGCGCGTGCTGTCCAGCGACCAG
CGACGCAACGGCCCGCGCTCGACCTACATCGGCAGCGAGACCTTCGTCAGCCTGGTGGACAGCCAGCAAGCGCCCTATCG
CCACGACCTGCGCCAACTGGGCGTGACCGCTCTGTGCACCAACCGCGACCTGCCGCTGTTCATGAGCGTGGGCAACGGCA
AGACCGACTTCACCCTCGCCGACAGTGCGCCGGTTGGCGCCGTGCGCTGCGTGGCCGGGCCCAGTCGCCCACGGGCCAGC
CATGCCCACGACGCCAAGGCCTGGCGGCTGATCAGCCAGTTGTCGCTGAACTACTTGTCGTTGAGCGAACAAGGCCAAGG
CGCAGCCGCCCTGCGTGAACTGCTGCGCCTGTACGGCGACAGCAACGACGCGGCGCTGCAGTTGCAGATCGAAGGCCTGC
GCGAAGTCAGCAGCAAAGCCTGCACCCGGCGCTTGCCGATGCCTGGCCCGATCGTGTTTGGTCGCGGCCTGGAGATCACC
CTGGAATTCGATGAAAACGCGTTTCGCGGCACCGGGGTGTTCCTGCTCGGCGCGGTGTTCGAGCGCTTCCTGGCACGCTA
CGTGTCGATCAACAGTTTTACCGAGACGGTGATCCGTACCACCGAACGCGGCGAGATCATGCGATGGAAAGCCAAGCCCG
GACGTCGTCCGACCCTGTGA