Detailed information of component protein


Summary

Component ID T6CP004485
Component protein type TssJ
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (169 a.a.); Nucleotide sequence (507 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29705
Coordinate (Strand) 6698563..6699069 (-)
NCBI ID WP_003206918.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1.4e-36 37..151
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 169 a.a.    

>T6CP004485 NC_015379:c6699069-6698563 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssJ]
MIPRFLLAVATVLLLTACAKDAANPQPEEAEADTAAIELHFHAIAGLNPGATGQPAPVRVRIFELKNAATFGRADYFALA
ERAQATLGADLIDQDEVLIQPGQQLSLQRDLDPATRHIGILVGYRELDQSLWRTVMNVPAREYTEYQISLDVRAVRSAVV
VPPSSPAQ*

  Nucleotide sequence: 507 bp    

>T6CP004485 NC_015379:c6699069-6698563 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssJ]
ATGATTCCCAGGTTTTTACTCGCAGTCGCCACCGTGCTTCTGCTGACGGCGTGCGCCAAGGATGCGGCCAACCCCCAGCC
CGAAGAAGCTGAGGCCGACACCGCCGCCATCGAGCTGCACTTTCACGCCATTGCCGGCCTCAACCCCGGCGCCACCGGCC
AGCCGGCCCCGGTCCGGGTGCGCATTTTCGAACTGAAAAATGCCGCGACCTTCGGCCGTGCCGATTATTTCGCCCTCGCC
GAACGGGCCCAGGCAACGCTGGGCGCCGACCTGATCGACCAGGACGAGGTGCTGATCCAGCCCGGCCAGCAACTGAGCCT
GCAACGCGACCTCGACCCGGCCACGCGGCATATCGGAATACTGGTGGGCTATCGCGAGCTGGACCAGTCGCTGTGGCGCA
CGGTGATGAACGTCCCGGCGCGCGAATACACCGAATACCAGATCAGCCTCGATGTGCGCGCCGTGCGCAGCGCCGTCGTC
GTCCCCCCATCCAGCCCTGCCCAATAA