Detailed information of component protein


Summary

Component ID T6CP012502
Component protein type PppA
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (244 a.a.); Nucleotide sequence (732 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29680
Coordinate (Strand) 6691017..6691748 (-)
NCBI ID WP_003206909.1
RefSeq NC_015379
Uniprot ID I4KLX4_PSEFL, A0A2M8STJ0_9PSED, A0A176NJV6_9PSED, F2K703_PSEBN
KEGG ID pba:PSEBR_a5550
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PP2C_2 PF13672.8 5.4e-08 21..204
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 244 a.a.    

>T6CP012502 NC_015379:c6691748-6691017 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [PppA]
MRPSAGKAIKSASKSHVGMVRQVNEDACLDLPENGLWVVADGMGGHAAGDYVSSLIVDSLRGIAVGRSLDEYVAALQSDL
LRVNAAVREETANRGVTMMGSTVVVLAARDLRGMCLWAGDSRLYRLRDGVLEGISRDHSYVQDLQDSGLLSEAEARVHPR
ANIVTRAIGVEAQLNLALTELLLVPGDSYLLCSDGLTKTVEDDEIREVLSHDEPGEIASSLVSLGLMRGAPDNITVVVVK
VPS*

  Nucleotide sequence: 732 bp    

>T6CP012502 NC_015379:c6691748-6691017 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [PppA]
ATGCGTCCAAGTGCCGGAAAAGCAATCAAGTCTGCAAGCAAGAGCCATGTCGGGATGGTCCGCCAGGTCAACGAAGACGC
CTGCCTGGACCTGCCGGAAAACGGCCTCTGGGTCGTGGCCGACGGCATGGGCGGGCACGCGGCGGGCGACTACGTCAGCA
GCCTGATCGTCGACAGCCTGCGCGGCATTGCCGTGGGTCGTTCGCTGGACGAATACGTCGCGGCGCTGCAAAGCGACCTG
TTGCGGGTCAACGCCGCCGTGCGTGAAGAAACCGCCAACCGTGGCGTGACGATGATGGGCAGCACTGTGGTGGTGTTGGC
CGCCCGCGACCTGCGCGGCATGTGCCTGTGGGCCGGTGACAGCCGTTTGTATCGCCTGCGCGACGGCGTGCTCGAAGGCA
TCTCCCGCGACCATAGCTACGTCCAGGATCTGCAGGACAGCGGCCTGCTCAGCGAAGCCGAGGCGCGGGTGCATCCACGC
GCCAACATTGTCACCCGGGCGATTGGCGTCGAGGCGCAACTGAACCTGGCGCTGACCGAGCTGTTGCTGGTGCCCGGCGA
CAGTTACCTGTTGTGCAGCGACGGGCTGACCAAGACCGTCGAGGACGATGAAATCCGCGAGGTATTGAGCCACGACGAGC
CCGGCGAAATCGCCAGCAGCCTGGTGTCCCTGGGCCTGATGCGCGGCGCGCCGGACAACATCACCGTGGTGGTTGTGAAG
GTGCCGTCATGA