Detailed information of component protein


Summary

Component ID T6CP004482
Component protein type TssM
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (1167 a.a.); Nucleotide sequence (3501 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29690
Coordinate (Strand) 6692399..6695899 (-)
NCBI ID WP_013694570.1
RefSeq NC_015379
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 9.2e-97 191..447
IcmF-related PF06761.14 1.2e-81 500..792
IcmF_C PF06744.14 3.1e-29 1041..1147
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1167 a.a.    

>T6CP004482 NC_015379:c6695899-6692399 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssM]
VKAFFSFMTRWVIPLLGLIALSLIIWFVGPLLDWLVPEGRRWALIILVFAVWIAYRVLRIIQARRQAAEVMRSLAAQTPP
DPTSIATAEELETLRQRMDEALALLKKAKLGGDERRNLYELPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGAVRGVG
GTRNCDWWFTDQAVLLDTAGRYTTQDSDATIDKAAWLGFLGLLKKQRARRPIDGAFIAISLSDLLLGSDAERAAHAAAIR
LRIQELYTQLGVRFPIYLMLTKLDLVPGFMEYFDTLSKEERAQVWGMTFALDDGKSSDSPLAHLQSEFTGLEQRLNDRLV
ERLQQERDPARRDLIYGFPQQFGALKDCLQSFLEGVFKPNAFEERVLLRGVYFTSGTQEGSPIDRLIGSMAQSMNLDRQH
LARQTGTGRSYFIEKLFTAVAFAERGLVGVDPKVERRRKWIARGVLASTVVLVLVVSTLWWVSYRANQAYIAQVDQKVAP
LGQTVQNLSPAQRDVLAVLPLLNAVKHLADDAPSWAEGLGLYQGDMLEAESGSVYRKLLIAVFAPRLLTRIEEQLHSGGN
SDFLYEGLKAYLMLADTEHYDADFIKAWIALDWDRSLPRDLPAEQRQALTAHLQALFERRPPLARLDPRLVEDLRRQLQQ
LPVAQRVYDRIKRQKLPEGIPDFRINEAAGRDAALVFSRKSGKPLGEPLSGFFTVKGYRQGFLLTSLSQTGTLAEEQWVL
GHEEADQQNVASLAADVRRLYFQDYLRQWDALLADIDFVPITSVAQAADVLRVISGPTSPLKKLLVAVAKETDLQQDERL
LAAQGAPVEGGVDKLKERLGSLLGQEQATQNAPAQSDDPITAHFAELNSIVSKSEGEPAAIDGLLADMNALYVQVSAMVG
ASGDALLGEAKNQATAAATRVSLNAERQPPLVQGLVKSVVNSTTNSMMGGVRNQLNAAWTSEVVNIYRQSLAGRYPMSPG
SARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSTPTWRWQPGAAQKLGIAPGVLQTFQRAATIRDAFFRSGGTQPMVR
FELKPVAMDSTITQFLLDLDGQQLSYDHGPSRPTAMQWPNPGSIGVVRISIMPPSSSGRSGITLDGPWAWFRLLEQSDLT
AGNSPDRFNLRLRVDGASASYELRANSAFNPFKSRVLSGFSLPERL*

  Nucleotide sequence: 3501 bp    

>T6CP004482 NC_015379:c6695899-6692399 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssM]
GTGAAGGCGTTTTTCAGTTTTATGACCCGCTGGGTCATCCCATTGCTGGGGCTGATCGCCCTGAGCCTGATCATCTGGTT
CGTTGGCCCGCTGCTCGATTGGCTGGTGCCCGAAGGCCGCCGCTGGGCCTTGATCATCCTGGTGTTCGCGGTATGGATCG
CCTACCGGGTGCTGCGCATCATCCAGGCGCGCCGTCAGGCCGCCGAAGTGATGCGCAGCCTGGCCGCGCAAACCCCACCG
GACCCGACCAGCATCGCCACCGCCGAAGAGCTCGAAACCCTGCGCCAGCGCATGGACGAAGCCTTGGCCCTGCTCAAGAA
AGCCAAGCTGGGCGGTGACGAGCGCCGCAACCTCTACGAGCTGCCGTGGTACGTGATCATCGGCCCGCCGGGTTCGGGCA
AGACCACCGCGCTGGTCAACTCCGGGCTGCATTTCCCACTGGCCGCGCAACTGGGCGCCGGCGCGGTACGCGGTGTCGGC
GGCACGCGCAATTGCGATTGGTGGTTCACCGACCAGGCGGTCCTGCTCGACACCGCCGGCCGCTACACCACCCAGGACAG
CGACGCGACCATCGACAAGGCCGCCTGGCTGGGCTTCCTGGGTCTGTTGAAAAAACAACGGGCCCGGCGCCCGATTGATG
GCGCGTTCATCGCCATCAGCCTGTCCGACCTGCTGCTGGGCAGCGACGCCGAGCGCGCCGCCCATGCCGCCGCAATCCGG
CTGCGGATCCAGGAGCTGTACACCCAACTGGGTGTGCGCTTCCCGATCTACCTGATGCTGACCAAGCTCGACCTCGTGCC
GGGGTTCATGGAGTATTTCGATACCCTGAGCAAGGAAGAGCGCGCCCAGGTCTGGGGCATGACCTTCGCCCTGGACGATG
GCAAGAGCAGCGATAGCCCGCTGGCGCACCTGCAAAGCGAATTCACCGGCCTTGAGCAGCGGCTCAACGACCGCTTGGTG
GAACGCCTGCAACAAGAGCGCGACCCGGCGCGGCGCGATCTGATCTACGGTTTCCCGCAGCAGTTCGGCGCCTTGAAAGA
TTGCCTGCAAAGCTTCCTCGAAGGCGTGTTCAAACCCAACGCCTTCGAAGAGCGCGTGTTGCTGCGTGGCGTGTATTTCA
CCAGTGGCACCCAGGAAGGCAGCCCGATCGACCGCCTGATCGGCTCCATGGCCCAGAGCATGAACCTGGATCGTCAGCAC
CTGGCGCGCCAGACCGGCACCGGGCGCAGTTATTTCATCGAAAAACTCTTCACCGCCGTGGCCTTCGCCGAGCGCGGGCT
GGTGGGCGTCGATCCGAAAGTCGAGCGGCGGCGCAAGTGGATCGCCCGCGGCGTATTGGCCTCCACCGTGGTGCTGGTGT
TGGTGGTCAGCACGTTGTGGTGGGTCAGCTATCGCGCCAACCAGGCCTACATTGCCCAGGTCGACCAGAAGGTCGCGCCG
TTGGGGCAAACCGTGCAGAACCTCAGCCCGGCGCAACGCGACGTCCTCGCCGTGTTGCCGTTGCTCAACGCCGTGAAACA
CCTGGCTGACGACGCACCGAGCTGGGCCGAAGGCCTGGGCTTGTACCAGGGCGACATGCTCGAAGCCGAGTCCGGCAGCG
TCTACCGCAAGCTGCTGATCGCGGTGTTCGCGCCACGTCTGCTGACGCGGATCGAAGAGCAGCTGCACAGCGGCGGCAAT
TCGGATTTCCTCTACGAAGGCTTGAAGGCCTACCTGATGCTCGCCGACACCGAGCATTACGATGCCGACTTCATCAAGGC
CTGGATCGCCCTGGATTGGGACCGCAGCCTGCCGCGGGATTTGCCGGCCGAGCAGCGCCAGGCCCTGACCGCGCATTTGC
AGGCGCTGTTCGAGCGGCGTCCGCCCCTCGCGCGCCTCGATCCTCGCCTGGTCGAAGACCTGCGCCGCCAGTTGCAGCAA
TTGCCGGTGGCCCAGCGGGTCTATGACCGGATCAAGCGCCAGAAGCTGCCCGAAGGCATCCCGGACTTCCGTATCAACGA
AGCCGCCGGGCGTGACGCGGCGCTGGTGTTCAGCCGCAAGAGCGGCAAGCCATTGGGCGAGCCGCTGAGCGGGTTCTTCA
CCGTCAAGGGTTACCGCCAGGGCTTCTTGCTCACCAGCCTGAGCCAGACCGGCACCCTGGCCGAAGAGCAATGGGTGCTT
GGCCACGAAGAGGCCGATCAGCAGAACGTCGCCAGCCTGGCTGCCGATGTGCGTCGCCTGTACTTCCAGGACTACCTGCG
CCAATGGGACGCCTTGCTGGCCGACATCGACTTTGTGCCGATCACCAGCGTGGCCCAGGCCGCCGATGTGCTGCGGGTGA
TTTCCGGCCCGACCTCACCGTTGAAAAAACTGCTGGTGGCGGTGGCGAAGGAAACCGACCTGCAACAGGATGAACGCCTG
CTGGCTGCCCAAGGTGCGCCGGTAGAAGGCGGTGTGGACAAGCTCAAGGAACGCCTGGGCAGCTTGCTCGGCCAGGAGCA
GGCGACGCAAAACGCACCGGCGCAAAGCGATGATCCGATCACCGCGCACTTCGCCGAGCTCAACAGCATCGTCAGCAAAA
GCGAAGGCGAGCCGGCGGCCATCGACGGTTTGCTGGCCGACATGAACGCTTTGTACGTGCAGGTCAGCGCCATGGTCGGT
GCCAGCGGCGACGCCTTGCTCGGCGAAGCCAAGAACCAGGCCACGGCCGCCGCTACACGCGTCAGCCTTAATGCCGAACG
CCAGCCGCCGCTGGTGCAGGGCCTGGTCAAGTCGGTGGTCAACTCCACCACCAACAGCATGATGGGCGGGGTGCGCAACC
AACTGAACGCCGCTTGGACCAGCGAAGTGGTGAACATCTATCGCCAGTCCCTGGCCGGGCGCTATCCGATGTCGCCAGGC
AGTGCGCGGGACGCGACCCTGGATGACTTCGGCCAGTTCTTCGGCGTCGGCGGGGTGATGGACAACTACTTCCGCAAGTA
CCTGCAACCCTACGTCGACACCTCGACCCCGACCTGGCGCTGGCAGCCGGGCGCGGCGCAGAAGCTCGGCATCGCCCCTG
GCGTGCTGCAGACCTTCCAGCGCGCGGCGACCATCCGCGATGCGTTCTTCCGTTCCGGTGGCACGCAGCCGATGGTGCGT
TTCGAACTCAAGCCGGTGGCGATGGACTCGACCATCACCCAGTTCCTGCTCGACCTCGACGGCCAGCAACTGAGCTACGA
CCACGGCCCAAGCCGGCCGACCGCCATGCAGTGGCCGAACCCGGGCAGCATCGGCGTGGTGCGGATCTCGATCATGCCGC
CGTCGTCCAGCGGTCGCTCCGGCATCACCCTGGATGGGCCGTGGGCCTGGTTCCGGCTGCTGGAACAATCGGATCTGACC
GCCGGCAACTCGCCGGATCGCTTCAACCTGCGGCTGCGGGTCGATGGTGCCAGCGCCTCTTATGAGCTGCGGGCCAACAG
CGCCTTCAACCCATTCAAGAGCCGGGTGCTCAGCGGCTTCAGCCTGCCGGAGCGGCTATGA