Detailed information of component protein


Summary

Component ID T6CP004490
Component protein type TssE
T6SS ID (Type) T6SS00432 insolico (Type i3)
Strain Pseudomonas brassicacearum subsp. brassicacearum NFM421
Replicon chromosome
Sequence Protein sequence (171 a.a.); Nucleotide sequence (513 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSEBR_RS29745
Coordinate (Strand) 6705904..6706416 (+)
NCBI ID WP_003206934.1
RefSeq NC_015379
Uniprot ID I4KM97_PSEFL, G8Q721_PSEF3, A0A0F4XKJ0_9PSED, A0A1K1T526_9PSED, A0A1H7D6A0_9PSED, A0A2T0ZTF0_9PSED, A0A0Q7A198_9PSED, A0A2V1YEN7_9PSED, A0A2M8STL7_9PSED, A0A6N1CHF0_9PSED, A0A2K9MAC8_PSEFL, F2K716_PSEBN
KEGG ID pfe:PSF113_5803, pba:PSEBR_a5563
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 3.9e-23 40..141
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 171 a.a.    

>T6CP004490 NC_015379:6705904-6706416 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssE]
MVTEIATRDRLQPSLLDRLTDDDPTNPKESADKRVLSLTQLKASVLRDLAWLLNTTSLLSADATLHTPAGTSVVNFGLPA
LAGNSASNVDVSALETLIHQAIATFEPRILRHTLRVRARATAEMNHNALSFEIEGDLWAQPVPLRLMLQTDLDLETGHVR
VVNADQRRRS*

  Nucleotide sequence: 513 bp    

>T6CP004490 NC_015379:6705904-6706416 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] [TssE]
TTGGTAACCGAAATCGCCACCCGCGATCGCCTTCAACCGTCCCTGCTGGACCGGTTGACCGACGACGATCCGACCAACCC
GAAGGAAAGCGCCGACAAGCGCGTGCTCTCCCTGACCCAATTAAAAGCCTCGGTGCTGCGTGACCTGGCGTGGCTGCTCA
ACACCACCTCATTGCTCAGCGCCGATGCCACGCTGCATACCCCGGCGGGCACGTCGGTGGTGAATTTCGGGCTGCCGGCA
CTGGCCGGCAACAGCGCGTCGAACGTCGATGTCTCGGCCCTGGAAACCTTGATCCACCAGGCCATTGCCACCTTCGAACC
GCGAATCCTGCGCCACACCCTGCGAGTGCGCGCCCGAGCGACGGCCGAGATGAACCACAATGCGTTGAGTTTCGAGATCG
AAGGCGATCTCTGGGCGCAGCCGGTGCCGCTGCGCCTGATGCTGCAAACCGACCTGGACCTGGAAACCGGCCATGTGCGC
GTGGTCAACGCCGACCAGCGGAGACGCTCATGA