Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   AT682_RS08785 Genome accession   NZ_LN831025
Coordinates   1719180..1720211 (-) Length   343 a.a.
NCBI ID   WP_002851424.1    Uniprot ID   Q0P7V6
Organism   Campylobacter jejuni strain NCTC11351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1714180..1725211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT682_RS08730 (ERS445056_01793) - 1714357..1714794 (-) 438 WP_002868868.1 DUF411 domain-containing protein -
  AT682_RS09640 - 1715094..1715508 (-) 415 Protein_1702 hypothetical protein -
  AT682_RS08765 (ERS445056_01800) - 1716167..1717015 (-) 849 WP_002882233.1 DNA ligase -
  AT682_RS08770 (ERS445056_01801) cgpA 1717015..1717677 (-) 663 WP_002866836.1 glycoprotein CgpA -
  AT682_RS08775 (ERS445056_01802) - 1717667..1717870 (-) 204 WP_002839177.1 hypothetical protein -
  AT682_RS08780 (ERS445056_01803) eno 1717936..1719180 (-) 1245 WP_002882234.1 phosphopyruvate hydratase -
  AT682_RS08785 (ERS445056_01804) recA 1719180..1720211 (-) 1032 WP_002851424.1 recombinase RecA Machinery gene
  AT682_RS08790 (ERS445056_01805) - 1720319..1721179 (+) 861 WP_002882235.1 menaquinone biosynthesis family protein -
  AT682_RS08795 (ERS445056_01806) fliQ 1721191..1721460 (+) 270 WP_002851290.1 flagellar biosynthesis protein FliQ -
  AT682_RS08800 (ERS445056_01807) murB 1721457..1722233 (+) 777 WP_002882236.1 UDP-N-acetylmuramate dehydrogenase -
  AT682_RS08805 (ERS445056_01808) - 1722256..1723026 (-) 771 WP_079254198.1 hypothetical protein -
  AT682_RS08810 (ERS445056_01809) cysQ 1723066..1723830 (-) 765 WP_002882237.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AT682_RS08815 (ERS445056_01810) gltA 1723911..1725179 (-) 1269 WP_002851494.1 citrate synthase -

Sequence


Protein


Download         Length: 343 a.a.        Molecular weight: 37049.27 Da        Isoelectric Point: 4.9784

>NTDB_id=991472 AT682_RS08785 WP_002851424.1 1719180..1720211(-) (recA) [Campylobacter jejuni strain NCTC11351]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMISGSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=991472 AT682_RS08785 WP_002851424.1 1719180..1720211(-) (recA) [Campylobacter jejuni strain NCTC11351]
ATGGATGATAATAAAAGAAAATCTCTAGACGCTGCCCTAAAAAGTTTAGATAAAACCTTTGGAAAAGGCACTATCTTAAG
ACTAGGGGATAAAGAAGTCGAGCAAATCGATAGCATAGGCACAGGTTCAGTTGGACTTGATCTTGCTTTAGGTATAGGCG
GTGTTCCAAAAGGAAGAATTATAGAAATTTATGGGCCTGAAAGTTCAGGTAAAACTACTCTAACTCTACACATTATCGCA
GAATGCCAAAAAGCAGGTGGGGTTTGTGCTTTTATCGATGCAGAACATGCACTTGATGTGAAATATGCTAAAAATTTAGG
TGTAAATACAGATGATTTGTATGTTTCTCAACCTGATTTTGGAGAGCAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGTGCAGTAGATCTTATTGTAGTAGATAGCGTTGCAGCACTTACCCCAAAAGCAGAAATTGAAGGCGATATGGGCGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
AGTAATTTTCATCAACCAAATTCGTATGAAAATCGGTGCTATGGGTTATGGTACTCCTGAAACCACAACAGGTGGAAATG
CATTAAAATTTTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCGTTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTCAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGCCGTGAAGGTGAATTGATCGATTATGGTGTAAAACTTGATATCGTAGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAATTCAAAAGCTTTCTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCGATTCAAAATTCTATGGGAATAGAAGGTATGATCAGCGGTAGCGAAGATGACGAAGGAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q0P7V6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

  recA Helicobacter pylori 26695

79.268

95.627

0.758

  recA Helicobacter pylori strain NCTC11637

78.963

95.627

0.755

  recA Neisseria gonorrhoeae strain FA1090

65.103

99.417

0.647

  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647

  recA Staphylococcus aureus strain ATCC 12600

64.897

98.834

0.641

  recA Acinetobacter nosocomialis M2

62.899

100

0.633

  recA Acinetobacter baylyi ADP1

62.974

100

0.63

  recA Acinetobacter baumannii D1279779

61.808

100

0.618

  recA Glaesserella parasuis strain SC1401

65.031

95.044

0.618

  recA Pseudomonas stutzeri DSM 10701

64.832

95.335

0.618

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.793

0.618

  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609

  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.506

94.461

0.609

  recA Vibrio cholerae strain A1552

64.506

94.461

0.609

  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609

  recA Streptococcus pneumoniae D39

58.824

99.125

0.583

  recA Streptococcus pneumoniae TIGR4

58.824

99.125

0.583

  recA Streptococcus pneumoniae R36A

58.824

99.125

0.583

  recA Streptococcus pneumoniae Rx1

58.824

99.125

0.583

  recA Streptococcus pneumoniae R6

58.824

99.125

0.583

  recA Streptococcus mitis SK321

57.647

99.125

0.571

  recA Streptococcus mitis NCTC 12261

58.967

95.918

0.566

  recA Streptococcus pyogenes NZ131

58.788

96.21

0.566

  recA Streptococcus thermophilus LMD-9

56.891

99.417

0.566

  recA Streptococcus thermophilus LMG 18311

56.598

99.417

0.563

  recA Latilactobacillus sakei subsp. sakei 23K

59.021

95.335

0.563

  recA Streptococcus mutans UA159

57.704

96.501

0.557

  recA Lactococcus lactis subsp. cremoris KW2

57.447

95.918

0.551

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.177

92.128

0.545