Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J5312_RS10615 Genome accession   NZ_JAGFUR010000001
Coordinates   2111974..2113005 (+) Length   343 a.a.
NCBI ID   WP_109475228.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190502E1-H1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2106974..2118005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5312_RS10595 (J5312_10595) - 2107170..2107838 (+) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  J5312_RS10600 (J5312_10600) - 2107903..2109915 (+) 2013 WP_064970352.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  J5312_RS10605 (J5312_10605) - 2109939..2110709 (+) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  J5312_RS10610 (J5312_10610) dinB 2110795..2111877 (+) 1083 WP_064970351.1 DNA polymerase IV -
  J5312_RS10615 (J5312_10615) recA 2111974..2113005 (+) 1032 WP_109475228.1 recombinase RecA Machinery gene
  J5312_RS10620 (J5312_10620) - 2113150..2114766 (+) 1617 WP_214193864.1 CTP synthase -
  J5312_RS10625 (J5312_10625) yidC 2114851..2116641 (+) 1791 WP_064970348.1 membrane protein insertase YidC -
  J5312_RS10630 (J5312_10630) - 2116745..2117329 (-) 585 WP_064970347.1 ribonuclease HII -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36842.13 Da        Isoelectric Point: 6.0799

>NTDB_id=990225 J5312_RS10615 WP_109475228.1 2111974..2113005(+) (recA) [Riemerella anatipestifer strain 20190502E1-H1]
MAKTETTSPNDDKKKALAAVLEKLDKTYGKGTVMKLGDGTVDHNIEVIPSGSLGLDLALGVGGYPKGRIVEIYGPESSGK
TTLTLHAIAEAQKAGGTAAFIDAEHAFDMHYAEKLGINLEELIVSQPDNGEQALEIADSLIRSGGVDIVVVDSVAALTPK
AEIDGDMGDSKMGLHARLMSQALRKLTSSISKTKCTVIFINQLRDKIGVMFGSLETTTGGNALKFYASVRIDIRRSLSDT
GKIKDKSGEVIGNRTKVKVVKNKVAPPFKSAEFDIMYGEGVSKVGEILDVATDLDIIQKSGSWFSYQDTKLGQGRDTVKD
LIKDNPELAEELEAKIREKLQAK

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=990225 J5312_RS10615 WP_109475228.1 2111974..2113005(+) (recA) [Riemerella anatipestifer strain 20190502E1-H1]
ATGGCAAAGACTGAAACAACAAGTCCTAACGATGATAAAAAGAAGGCATTAGCAGCCGTATTAGAAAAACTAGATAAAAC
CTACGGTAAAGGTACCGTTATGAAACTAGGTGATGGTACGGTAGACCATAATATAGAGGTGATTCCGTCAGGTTCTTTAG
GGCTAGATTTAGCTTTAGGGGTAGGCGGTTATCCTAAGGGGAGAATAGTAGAAATCTACGGTCCAGAATCTTCTGGTAAA
ACTACATTAACGCTTCACGCAATTGCGGAAGCTCAAAAAGCAGGGGGAACAGCAGCATTTATAGATGCAGAACATGCTTT
TGATATGCACTATGCCGAAAAATTAGGCATCAATCTAGAAGAGCTTATTGTGTCTCAACCAGATAATGGAGAGCAGGCGT
TAGAAATTGCAGATAGCCTTATCCGTTCTGGAGGTGTGGATATTGTGGTGGTAGACTCTGTGGCAGCACTTACGCCTAAA
GCAGAGATTGATGGAGATATGGGGGATTCTAAAATGGGGCTTCACGCAAGACTAATGTCTCAAGCACTTAGAAAATTAAC
TTCTTCTATTTCTAAAACAAAATGTACTGTAATTTTCATCAACCAGTTGAGAGATAAAATTGGAGTAATGTTTGGTAGTC
TTGAAACAACAACGGGAGGTAACGCTCTTAAATTCTATGCTTCGGTAAGGATAGATATCAGACGTTCGTTGAGTGATACA
GGTAAAATTAAAGACAAATCTGGCGAAGTTATAGGAAACCGAACTAAAGTAAAAGTGGTTAAAAACAAAGTAGCTCCACC
ATTTAAGAGTGCTGAGTTTGATATTATGTATGGGGAAGGTGTGTCTAAAGTTGGTGAGATTTTAGATGTGGCTACAGATT
TAGATATTATCCAAAAGAGTGGTTCTTGGTTCAGTTATCAGGATACAAAGCTAGGGCAGGGGCGTGATACGGTGAAAGAC
CTCATTAAGGATAATCCTGAACTTGCAGAAGAGCTAGAAGCAAAAATCAGAGAAAAATTACAAGCTAAGTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(15-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

99.125

100

0.991
  recA Neisseria gonorrhoeae strain FA1090

66.768

95.627

0.638
  recA Neisseria gonorrhoeae MS11

66.768

95.627

0.638
  recA Glaesserella parasuis strain SC1401

65.152

96.21

0.627
  recA Helicobacter pylori 26695

64.157

96.793

0.621
  recA Helicobacter pylori strain NCTC11637

64.157

96.793

0.621
  recA Acinetobacter baylyi ADP1

63.772

97.376

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.855

96.793

0.618
  recA Acinetobacter baumannii D1279779

63.444

96.501

0.612
  recA Acinetobacter nosocomialis M2

63.142

96.501

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

95.335

0.606
  recA Streptococcus pyogenes NZ131

62.048

96.793

0.601
  recA Ralstonia pseudosolanacearum GMI1000

64.984

92.42

0.601
  recA Streptococcus mutans UA159

60.117

99.417

0.598
  recA Pseudomonas stutzeri DSM 10701

61.078

97.376

0.595
  recA Streptococcus thermophilus LMD-9

59.882

98.834

0.592
  recA Streptococcus thermophilus LMG 18311

59.882

98.834

0.592
  recA Streptococcus mitis NCTC 12261

61.89

95.627

0.592
  recA Streptococcus mitis SK321

61.89

95.627

0.592
  recA Vibrio cholerae strain A1552

60.725

96.501

0.586
  recA Staphylococcus aureus strain ATCC 12600

60.725

96.501

0.586
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.725

96.501

0.586
  recA Streptococcus pneumoniae TIGR4

60.423

96.501

0.583
  recA Streptococcus pneumoniae R6

60.423

96.501

0.583
  recA Streptococcus pneumoniae D39

60.423

96.501

0.583
  recA Streptococcus pneumoniae Rx1

60.423

96.501

0.583
  recA Streptococcus pneumoniae R36A

60.423

96.501

0.583
  recA Lactococcus lactis subsp. cremoris KW2

60.182

95.918

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

59.021

95.335

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.81

100

0.548