Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R8625_RS02410 Genome accession   NZ_AP026923
Coordinates   473557..474288 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 468557..479288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS02385 (PC0054_04680) - 470237..470593 (+) 357 WP_000114422.1 hypothetical protein -
  R8625_RS02390 (PC0054_04690) dnaJ 470866..472002 (+) 1137 WP_317641686.1 molecular chaperone DnaJ -
  R8625_RS02395 (PC0054_04700) - 472336..472620 (-) 285 WP_050150649.1 hypothetical protein -
  R8625_RS02400 (PC0054_04710) - 472782..473069 (-) 288 WP_317649295.1 hypothetical protein -
  R8625_RS02405 (PC0054_04720) - 473079..473489 (-) 411 WP_001278301.1 HIT family protein -
  R8625_RS02410 (PC0054_04730) pptA 473557..474288 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  R8625_RS02415 (PC0054_04740) - 474285..475334 (+) 1050 WP_000653752.1 ABC transporter permease -
  R8625_RS02420 (PC0054_04750) - 475502..475831 (-) 330 WP_000132575.1 hypothetical protein -
  R8625_RS02425 (PC0054_04760) - 476107..476445 (+) 339 WP_000682122.1 LytTR family DNA-binding domain-containing protein -
  R8625_RS02430 (PC0054_04770) comE/blpR 476450..477187 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  R8625_RS02435 (PC0054_04780) - 477200..478540 (+) 1341 WP_000275284.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=98171 R8625_RS02410 WP_000889923.1 473557..474288(+) (pptA) [Streptococcus pneumoniae strain PZ900700054]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=98171 R8625_RS02410 WP_000889923.1 473557..474288(+) (pptA) [Streptococcus pneumoniae strain PZ900700054]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment