Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ACEPMY_RS14195 Genome accession   NZ_CP168729
Coordinates   2986591..2987649 (-) Length   352 a.a.
NCBI ID   WP_011000510.1    Uniprot ID   Q8Y1Y6
Organism   Ralstonia pseudosolanacearum strain RUN6340     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2981591..2992649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPMY_RS14170 (ACEPMY_14170) - 2982069..2982767 (-) 699 WP_197345154.1 TerC family protein -
  ACEPMY_RS14175 (ACEPMY_14175) sucD 2982917..2983798 (-) 882 WP_011000514.1 succinate--CoA ligase subunit alpha -
  ACEPMY_RS14180 (ACEPMY_14180) sucC 2983883..2985049 (-) 1167 WP_011000513.1 ADP-forming succinate--CoA ligase subunit beta -
  ACEPMY_RS14185 (ACEPMY_14185) - 2985116..2985742 (-) 627 WP_197345153.1 DUF2889 domain-containing protein -
  ACEPMY_RS14190 (ACEPMY_14190) recX 2986017..2986496 (-) 480 WP_197345152.1 recombination regulator RecX -
  ACEPMY_RS14195 (ACEPMY_14195) recA 2986591..2987649 (-) 1059 WP_011000510.1 recombinase RecA Machinery gene
  ACEPMY_RS14200 (ACEPMY_14200) - 2987926..2988624 (+) 699 WP_011000509.1 response regulator transcription factor -
  ACEPMY_RS14205 (ACEPMY_14205) - 2988617..2990158 (+) 1542 WP_405124683.1 sensor histidine kinase N-terminal domain-containing protein -
  ACEPMY_RS14210 (ACEPMY_14210) - 2990155..2990472 (+) 318 WP_028852629.1 sodium/substrate symporter small subunit -
  ACEPMY_RS14215 (ACEPMY_14215) - 2990671..2992374 (+) 1704 WP_016723983.1 MFS transporter -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37658.31 Da        Isoelectric Point: 4.9116

>NTDB_id=936664 ACEPMY_RS14195 WP_011000510.1 2986591..2987649(-) (recA) [Ralstonia pseudosolanacearum strain RUN6340]
MEDGKKAASMSAEKQKALAAALAQIEKQFGKGSIMKMGDAEVEPVQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESSGK
TTLTLQVVAEMQKLGGTCAFIDAEHALDVTYADKLGVKVPDLLISQPDTGEQALEIADALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDALPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIK
KGDEVVGNETKVKVVKNKVAPPFREAIFDILYGAGVSREGEIIDLGVEAKVVEKSGAWYSYNGERIGQGRDNCREFLREN
AELAREIENKVREHLGVTPMGAVTLAEEVEED

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=936664 ACEPMY_RS14195 WP_011000510.1 2986591..2987649(-) (recA) [Ralstonia pseudosolanacearum strain RUN6340]
ATGGAAGACGGCAAGAAGGCAGCCTCGATGAGCGCAGAAAAGCAGAAGGCGCTGGCTGCCGCGCTCGCGCAGATCGAAAA
GCAGTTCGGCAAGGGCTCGATCATGAAGATGGGCGACGCCGAGGTGGAGCCGGTCCAGGTTGTGTCCACCGGCTCGCTGG
GTCTGGACGTCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGTCGCGTGGTCGAGATCTACGGCCCCGAATCGTCCGGCAAG
ACCACGCTGACGCTGCAGGTGGTCGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCTTTCATCGACGCCGAGCATGCGCT
GGACGTCACCTATGCCGACAAGCTCGGCGTGAAGGTGCCGGACCTGTTGATCTCCCAACCGGACACCGGTGAGCAGGCGC
TGGAAATCGCCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTGGCCGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACGCGCTGCCCGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCTCGC
CGGAAACCACCACGGGCGGCAATGCGCTCAAGTTTTACGCTTCGGTGCGTCTGGACATCCGCCGCATCGGCTCGATCAAG
AAGGGCGATGAGGTGGTCGGCAACGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCCGCGAGGCGAT
CTTCGACATCCTCTACGGTGCGGGCGTGTCGCGCGAAGGCGAGATCATCGATCTGGGCGTGGAAGCCAAGGTGGTCGAGA
AATCCGGCGCCTGGTACAGCTACAACGGCGAGCGCATCGGCCAGGGCCGTGACAACTGCCGCGAATTCCTGCGCGAAAAC
GCCGAACTGGCCCGCGAGATCGAAAACAAGGTCCGCGAACACCTGGGCGTGACGCCGATGGGCGCCGTCACGCTGGCCGA
GGAAGTCGAGGAAGATTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(16-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

100

100

1
  recA Pseudomonas stutzeri DSM 10701

72.303

97.443

0.705
  recA Neisseria gonorrhoeae strain FA1090

74.468

93.466

0.696
  recA Neisseria gonorrhoeae MS11

74.468

93.466

0.696
  recA Acinetobacter baumannii D1279779

70.058

97.727

0.685
  recA Acinetobacter nosocomialis M2

70.262

97.443

0.685
  recA Acinetobacter baylyi ADP1

69.679

97.443

0.679
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.822

96.023

0.67
  recA Vibrio cholerae strain A1552

69.822

96.023

0.67
  recA Glaesserella parasuis strain SC1401

70.031

92.898

0.651
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.286

95.455

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

97.443

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.759

94.318

0.611
  recA Staphylococcus aureus strain ATCC 12600

64.134

93.466

0.599
  recA Helicobacter pylori 26695

63.83

93.466

0.597
  recA Helicobacter pylori strain NCTC11637

63.526

93.466

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

63.804

92.614

0.591
  recA Lactococcus lactis subsp. cremoris KW2

60.303

93.75

0.565
  recA Streptococcus pneumoniae Rx1

59.697

93.75

0.56
  recA Streptococcus pneumoniae TIGR4

59.697

93.75

0.56
  recA Streptococcus pneumoniae R6

59.697

93.75

0.56
  recA Streptococcus pneumoniae D39

59.697

93.75

0.56
  recA Streptococcus pneumoniae R36A

59.697

93.75

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.123

92.614

0.557
  recA Streptococcus mitis SK321

59.394

93.75

0.557
  recA Streptococcus mitis NCTC 12261

59.394

93.75

0.557
  recA Streptococcus thermophilus LMD-9

57.31

97.159

0.557
  recA Streptococcus thermophilus LMG 18311

57.31

97.159

0.557
  recA Streptococcus mutans UA159

59.271

93.466

0.554
  recA Streptococcus pyogenes NZ131

58.537

93.182

0.545