Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SAJP025_RS02500 Genome accession   NZ_AP025683
Coordinates   538724..539293 (+) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP025     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 533724..544293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAJP025_RS02475 (SAJP025_04550) cysE 534937..535584 (+) 648 WP_017466658.1 serine O-acetyltransferase -
  SAJP025_RS02480 (SAJP025_04560) cysS 535568..536968 (+) 1401 WP_000631982.1 cysteine--tRNA ligase -
  SAJP025_RS02485 (SAJP025_04570) - 536961..537365 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  SAJP025_RS02490 (SAJP025_04580) rlmB 537373..538119 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SAJP025_RS02495 (SAJP025_04590) - 538119..538643 (+) 525 WP_000664740.1 NYN domain-containing protein -
  SAJP025_RS02500 (SAJP025_04600) sigH 538724..539293 (+) 570 WP_000872867.1 RNA polymerase sigma factor Regulator
  SAJP025_RS02505 rpmG 539408..539551 (+) 144 WP_001791441.1 50S ribosomal protein L33 -
  SAJP025_RS02510 (SAJP025_04610) secE 539607..539789 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SAJP025_RS02515 (SAJP025_04620) nusG 539802..540350 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  SAJP025_RS02520 (SAJP025_04630) rplK 540531..540953 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SAJP025_RS02525 (SAJP025_04640) rplA 541161..541853 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  SAJP025_RS02530 (SAJP025_04650) rplJ 542125..542625 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  SAJP025_RS02535 (SAJP025_04660) rplL 542668..543036 (+) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  SAJP025_RS02540 (SAJP025_04670) - 543211..543819 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=93566 SAJP025_RS02500 WP_000872867.1 538724..539293(+) (sigH) [Staphylococcus aureus strain JP025]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=93566 SAJP025_RS02500 WP_000872867.1 538724..539293(+) (sigH) [Staphylococcus aureus strain JP025]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment