Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   VXF94_RS03485 Genome accession   NZ_CP143956
Coordinates   739356..739952 (-) Length   198 a.a.
NCBI ID   WP_013352088.1    Uniprot ID   A0A9P1JH25
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 734356..744952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS03460 (VXF94_03460) mobB 734730..735251 (-) 522 WP_014471749.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  VXF94_RS03465 (VXF94_03465) glp 735212..736504 (-) 1293 WP_013352092.1 gephyrin-like molybdotransferase Glp -
  VXF94_RS03470 (VXF94_03470) - 736522..737541 (-) 1020 WP_013352091.1 molybdopterin-synthase adenylyltransferase MoeB -
  VXF94_RS03475 (VXF94_03475) - 737594..738196 (-) 603 WP_013352090.1 molybdenum cofactor guanylyltransferase -
  VXF94_RS03480 (VXF94_03480) - 738343..739335 (+) 993 WP_013352089.1 hypothetical protein -
  VXF94_RS03485 (VXF94_03485) rok 739356..739952 (-) 597 WP_013352088.1 transcriptional regulator Rok Regulator
  VXF94_RS03490 (VXF94_03490) - 740417..740875 (-) 459 WP_014470457.1 TlpA family protein disulfide reductase -
  VXF94_RS03495 (VXF94_03495) - 740890..741093 (-) 204 Protein_702 peroxiredoxin -
  VXF94_RS03500 (VXF94_03500) - 741327..742133 (+) 807 WP_013352085.1 mechanosensitive ion channel family protein -
  VXF94_RS03505 (VXF94_03505) - 742167..742412 (-) 246 WP_013352084.1 YkuS family protein -
  VXF94_RS03510 (VXF94_03510) - 742473..743597 (-) 1125 WP_013352083.1 N-acetyldiaminopimelate deacetylase -
  VXF94_RS03515 (VXF94_03515) dapD 743668..744378 (-) 711 WP_013352082.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  VXF94_RS03520 (VXF94_03520) - 744460..744915 (-) 456 WP_013352081.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22539.60 Da        Isoelectric Point: 9.6909

>NTDB_id=932185 VXF94_RS03485 WP_013352088.1 739356..739952(-) (rok) [Bacillus amyloliquefaciens strain Fad 108]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSTQPQMQSITTLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETGNDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=932185 VXF94_RS03485 WP_013352088.1 739356..739952(-) (rok) [Bacillus amyloliquefaciens strain Fad 108]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCAGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTACCAAAAGCCGCAG
ACACAGCCTCAATCCACCCAGCCGCAAATGCAGTCTATTACGACTCTTCCAGCCGGCATTCCAGACGGTTCTACTAGAAG
AAGAAGAGGGACGGCAAGACCGGGTTCAAAGGCGGCAAAACTGCGCGAAGCAGCCATTAAAACATTGAAACGCCACAATG
CAGCAATCAAAAGTTCAGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACCTTTATG
CAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGGAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

85.052

97.98

0.833