Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SR858_RS22500 Genome accession   NZ_CP140152
Coordinates   5100461..5101888 (-) Length   475 a.a.
NCBI ID   WP_084670080.1    Uniprot ID   -
Organism   Duganella zoogloeoides strain ATCC 25935     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5095461..5106888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR858_RS22490 (SR858_22490) - 5096628..5099582 (-) 2955 WP_019923136.1 ribonucleoside-diphosphate reductase subunit alpha -
  SR858_RS22495 (SR858_22495) ampD 5099868..5100464 (-) 597 WP_019923137.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  SR858_RS22500 (SR858_22500) pilR 5100461..5101888 (-) 1428 WP_084670080.1 sigma-54 dependent transcriptional regulator Regulator
  SR858_RS22505 (SR858_22505) - 5101903..5103576 (-) 1674 WP_019923139.1 PAS domain-containing sensor histidine kinase -
  SR858_RS22510 (SR858_22510) - 5103581..5103877 (-) 297 WP_026637520.1 PP0621 family protein -
  SR858_RS22515 (SR858_22515) - 5103874..5104677 (-) 804 WP_019923141.1 inner membrane protein YpjD -
  SR858_RS22520 (SR858_22520) - 5104717..5105511 (-) 795 WP_019923142.1 ABC transporter ATP-binding protein -
  SR858_RS22525 (SR858_22525) - 5105508..5106347 (-) 840 WP_019923143.1 ABC transporter permease -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 50299.70 Da        Isoelectric Point: 5.7734

>NTDB_id=913086 SR858_RS22500 WP_084670080.1 5100461..5101888(-) (pilR) [Duganella zoogloeoides strain ATCC 25935]
MSVRSPRVLVVDDEADLRELLELTLVKMGLDVDSAATVAEARALLARHPYQLVLTDMRLPDGLGLELVRDVATTYKNTPI
AVVTAFGSADNAVVALKAGAFDYIAKPVALDQLRLLVRSALRVHEAAPGMPGNGPADAAADAVDGRLKGGSAVMAALRAQ
IGRLARSMAPIAIHGESGSGKELAAREIHARSPRAGQPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADDRDGFFQAANG
GTLLLDEVADLPLAMQVKLLRAIQERRVRKIGATSEEPVDVRLISATHKNLARCVEQGAFRQDLFYRLNVIELAVPPLRE
RQGDLPALADAILERLGGGGHKAALGPGVLEALAGYRFPGNVRELENILERALAFANDGVIEVADLALKAGQGSQGGDGV
AAAASSAASSAISSPAPADLPASLPDYLIAIERDIILRALVQTQFNRTQAAQLLGISFRQLRYQMQKLNIQEPEA

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=913086 SR858_RS22500 WP_084670080.1 5100461..5101888(-) (pilR) [Duganella zoogloeoides strain ATCC 25935]
ATGAGCGTGAGGTCCCCCCGCGTGCTCGTCGTCGATGATGAAGCCGACCTGCGCGAACTGCTGGAGCTGACCCTGGTAAA
AATGGGGCTCGATGTCGACAGCGCCGCTACCGTGGCCGAGGCCCGCGCGCTGCTGGCCCGCCACCCCTATCAACTGGTAC
TGACCGACATGCGCCTGCCCGACGGCCTGGGGCTGGAACTGGTGCGCGACGTGGCCACCACATACAAGAACACGCCGATC
GCGGTGGTCACCGCTTTCGGCAGTGCCGACAACGCGGTGGTCGCGCTCAAGGCCGGCGCGTTCGACTACATCGCCAAGCC
GGTCGCCCTCGATCAGCTGCGCCTGCTGGTGCGTTCGGCGCTGCGGGTGCACGAGGCCGCGCCCGGTATGCCTGGCAATG
GCCCGGCCGATGCCGCTGCCGATGCCGTGGACGGCCGGCTCAAGGGCGGATCGGCCGTGATGGCGGCGCTGCGCGCGCAG
ATCGGCCGGCTGGCGCGGTCGATGGCGCCGATCGCCATCCACGGCGAATCGGGCAGCGGCAAGGAGCTGGCGGCGCGCGA
AATCCACGCCCGCAGCCCGCGCGCCGGCCAGCCTTTCATTGCAGTCAACTGCGGTGCGATCCCGGAGGCGCTGATGGAAG
CCGAGTTTTTCGGCTACCGCAAGGGGGCGTTTACCGGCGCGGCCGACGACCGCGACGGCTTTTTCCAGGCCGCCAACGGC
GGCACCCTGCTGCTCGACGAGGTGGCCGATCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCG
CGTGCGCAAGATCGGCGCTACGTCGGAGGAGCCGGTCGATGTGCGCCTGATCAGCGCCACCCACAAGAACCTGGCGCGGT
GCGTGGAGCAGGGTGCCTTTCGCCAGGACCTGTTCTATCGCCTGAACGTGATCGAACTGGCGGTGCCGCCGCTGCGCGAA
CGCCAGGGCGATCTGCCGGCGCTGGCCGACGCCATCCTCGAACGCCTCGGCGGCGGCGGCCACAAGGCGGCGCTGGGGCC
GGGCGTGCTCGAAGCGCTGGCCGGCTACCGCTTTCCCGGCAATGTGCGCGAACTGGAAAACATCCTCGAGCGTGCGCTGG
CGTTTGCCAACGACGGCGTGATCGAGGTGGCCGACCTGGCGCTCAAGGCCGGGCAGGGGAGCCAGGGTGGCGATGGCGTG
GCGGCGGCCGCGTCGTCTGCCGCGTCGTCTGCCATATCGTCGCCCGCGCCGGCCGACTTGCCGGCCAGCCTGCCCGACTA
CCTGATCGCCATCGAGCGCGATATCATCTTGCGGGCACTGGTGCAGACGCAGTTCAACCGCACCCAGGCCGCGCAACTGC
TGGGCATCAGCTTCCGCCAGTTGCGCTATCAAATGCAGAAACTCAATATCCAGGAACCTGAAGCATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(430-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(149-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.009

98.105

0.549
  pilR Acinetobacter baumannii strain A118

43.882

99.789

0.438