Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   R3O66_RS14510 Genome accession   NZ_CP137209
Coordinates   2838995..2839522 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain 9VPs_Sm2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2833995..2844522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3O66_RS14480 (R3O66_14480) - 2834443..2835246 (+) 804 WP_058611245.1 hypothetical protein -
  R3O66_RS14485 (R3O66_14485) - 2835291..2836181 (-) 891 WP_070373458.1 PhzF family phenazine biosynthesis protein -
  R3O66_RS14490 (R3O66_14490) - 2836221..2836625 (-) 405 WP_204207568.1 nucleoside 2-deoxyribosyltransferase -
  R3O66_RS14495 (R3O66_14495) - 2836651..2837199 (-) 549 WP_204207567.1 nucleotidyltransferase family protein -
  R3O66_RS14500 (R3O66_14500) - 2838129..2838596 (+) 468 WP_204207566.1 hypothetical protein -
  R3O66_RS14505 (R3O66_14505) rpsR 2838693..2838935 (-) 243 WP_025906198.1 30S ribosomal protein S18 -
  R3O66_RS14510 (R3O66_14510) ssbA 2838995..2839522 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  R3O66_RS14515 (R3O66_14515) rpsF 2839550..2839843 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  R3O66_RS14520 (R3O66_14520) ychF 2840015..2841115 (-) 1101 WP_048542912.1 redox-regulated ATPase YchF -
  R3O66_RS14525 (R3O66_14525) - 2841119..2841316 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  R3O66_RS14530 (R3O66_14530) - 2841340..2842224 (-) 885 WP_049320694.1 mechanosensitive ion channel family protein -
  R3O66_RS14535 (R3O66_14535) - 2842236..2843072 (-) 837 WP_070368812.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=896910 R3O66_RS14510 WP_025906200.1 2838995..2839522(-) (ssbA) [Mammaliicoccus sciuri strain 9VPs_Sm2]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=896910 R3O66_RS14510 WP_025906200.1 2838995..2839522(-) (ssbA) [Mammaliicoccus sciuri strain 9VPs_Sm2]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAACCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537