Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B0E36_RS08075 Genome accession   NZ_CP150879
Coordinates   1937531..1938652 (-) Length   373 a.a.
NCBI ID   WP_234527355.1    Uniprot ID   -
Organism   Streptomyces sp. MH191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1932531..1943652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0E36_RS08055 - 1933466..1935226 (+) 1761 WP_234527364.1 FAD-dependent monooxygenase -
  B0E36_RS08060 - 1935523..1936098 (+) 576 WP_234527357.1 cysteine dioxygenase -
  B0E36_RS08065 - 1936140..1936556 (+) 417 WP_191852103.1 rhodanese-like domain-containing protein -
  B0E36_RS08070 recX 1936712..1937524 (-) 813 WP_234527356.1 recombination regulator RecX -
  B0E36_RS08075 recA 1937531..1938652 (-) 1122 WP_234527355.1 recombinase RecA Machinery gene
  B0E36_RS08080 - 1938864..1939052 (-) 189 WP_234527354.1 hypothetical protein -
  B0E36_RS08085 - 1939183..1939959 (+) 777 Protein_1612 hypothetical protein -
  B0E36_RS08090 - 1940008..1941255 (-) 1248 WP_234527353.1 AI-2E family transporter -
  B0E36_RS08095 - 1941377..1941571 (-) 195 WP_006142551.1 DUF3046 domain-containing protein -
  B0E36_RS08100 - 1941624..1941932 (-) 309 WP_006142550.1 AzlD domain-containing protein -
  B0E36_RS08105 - 1941929..1942690 (-) 762 WP_167795023.1 AzlC family ABC transporter permease -
  B0E36_RS08110 - 1942701..1943552 (-) 852 WP_093600073.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39538.11 Da        Isoelectric Point: 6.9900

>NTDB_id=880939 B0E36_RS08075 WP_234527355.1 1937531..1938652(-) (recA) [Streptomyces sp. MH191]
MAGTDREKALDAALAQIERQFGKGAVMRMGDRTNEPIEVIPTGSTALDVALGVGGLPRGRVVEIYGPESSGKTTLTLHAV
ANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAVGN
RTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
RKIKEKLGVGVRPAEPAPAEPGTDAAVTAPAADAKAVPAPAAKATKAKAAAAK

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=880939 B0E36_RS08075 WP_234527355.1 1937531..1938652(-) (recA) [Streptomyces sp. MH191]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTCAT
GCGCATGGGTGACCGGACGAACGAGCCCATCGAGGTCATCCCGACCGGATCCACCGCGCTGGACGTGGCCCTCGGCGTCG
GTGGCCTGCCGCGCGGCCGAGTGGTGGAGATCTACGGCCCGGAGTCCTCCGGCAAGACAACCCTCACCCTGCACGCCGTG
GCGAACGCGCAGAAGGCCGGCGGCCAGGTCGCGTTCGTGGACGCCGAGCACGCGCTCGACCCCGAGTACGCGAAGAAGCT
GGGCGTCGACATCGACAACCTGATCCTCTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCCGTCGCCGCGCTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACAGCCACGTGGGTCTGCAGGCCCGTCTGATGAGCCAGGCCCTGCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCCATCTTCATCAACCAGCTCCGCGAGAAGATCGGTGTGATGTTCGGCTCACCCGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGCATCGACATCCGCCGCATCGAGACGCTGAAGGACGGCACGGACGCGGTCGGCAAC
CGCACTCGCTGCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCACGG
CATCAGCCGCGAGGGCGGACTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGTAAGGCCGGCGCCTGGTACACGTACG
AGGGCGATCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTGAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AGGAAGATCAAGGAGAAGCTGGGCGTCGGTGTCCGTCCGGCGGAGCCCGCTCCCGCCGAGCCGGGCACGGACGCGGCCGT
GACGGCTCCCGCGGCGGACGCCAAGGCGGTGCCCGCACCGGCGGCCAAGGCCACCAAGGCGAAGGCCGCGGCGGCGAAGT
AG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.698

92.225

0.606
  recA Neisseria gonorrhoeae MS11

66.172

90.349

0.598
  recA Neisseria gonorrhoeae strain FA1090

66.172

90.349

0.598
  recA Staphylococcus aureus strain ATCC 12600

65.385

90.617

0.592
  recA Ralstonia pseudosolanacearum GMI1000

69.649

83.914

0.584
  recA Acinetobacter baumannii D1279779

67.492

86.595

0.584
  recA Acinetobacter baylyi ADP1

67.183

86.595

0.582
  recA Acinetobacter nosocomialis M2

67.183

86.595

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

66.258

87.399

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

63.018

90.617

0.571
  recA Vibrio cholerae strain A1552

65.635

86.595

0.568
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.635

86.595

0.568
  recA Helicobacter pylori 26695

62.426

90.617

0.566
  recA Helicobacter pylori strain NCTC11637

62.426

90.617

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

88.204

0.555
  recA Streptococcus pneumoniae Rx1

57.865

95.442

0.552
  recA Streptococcus pneumoniae D39

57.865

95.442

0.552
  recA Streptococcus pneumoniae TIGR4

57.865

95.442

0.552
  recA Streptococcus pneumoniae R6

57.865

95.442

0.552
  recA Streptococcus pneumoniae R36A

57.865

95.442

0.552
  recA Streptococcus pyogenes NZ131

62.424

88.472

0.552
  recA Streptococcus mutans UA159

61.934

88.74

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

87.399

0.55
  recA Glaesserella parasuis strain SC1401

59.824

91.421

0.547
  recA Streptococcus thermophilus LMD-9

61.329

88.74

0.544
  recA Streptococcus thermophilus LMG 18311

61.329

88.74

0.544
  recA Streptococcus mitis NCTC 12261

61.027

88.74

0.542
  recA Streptococcus mitis SK321

61.027

88.74

0.542
  recA Lactococcus lactis subsp. cremoris KW2

61.027

88.74

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

85.791

0.504