Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SHJJP9001_RS08455 Genome accession   NZ_CP132999
Coordinates   1815620..1816195 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain SEA37     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810620..1821195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHJJP9001_RS08410 (SHJJP9001_001678) - 1811265..1811480 (+) 216 WP_001831694.1 NINE protein -
  SHJJP9001_RS08415 (SHJJP9001_001679) - 1812132..1812290 (+) 159 WP_002503132.1 replication/maintenance protein RepL -
  SHJJP9001_RS08420 (SHJJP9001_001680) - 1812360..1812872 (-) 513 WP_306433013.1 LysE family transporter -
  SHJJP9001_RS08425 (SHJJP9001_001681) - 1812980..1813321 (-) 342 WP_032603364.1 fatty acid desaturase -
  SHJJP9001_RS08430 (SHJJP9001_001682) - 1813584..1813820 (-) 237 WP_001829451.1 hypothetical protein -
  SHJJP9001_RS08435 - 1814022..1814273 (-) 252 WP_001829448.1 plasmid recombination protein -
  SHJJP9001_RS08440 - 1814355..1814582 (-) 228 WP_080033396.1 plasmid recombination protein -
  SHJJP9001_RS08455 (SHJJP9001_001686) comK/comK1 1815620..1816195 (-) 576 WP_001829272.1 competence protein ComK Regulator
  SHJJP9001_RS08460 (SHJJP9001_001687) - 1816410..1816628 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  SHJJP9001_RS08465 (SHJJP9001_001688) - 1816706..1817692 (-) 987 WP_001829269.1 lipoate--protein ligase -
  SHJJP9001_RS08470 (SHJJP9001_001689) - 1817897..1818082 (+) 186 WP_001829339.1 DUF2187 family protein -
  SHJJP9001_RS08475 (SHJJP9001_001690) - 1818088..1818690 (+) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  SHJJP9001_RS08480 (SHJJP9001_001691) - 1818793..1820298 (-) 1506 WP_341591526.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=871277 SHJJP9001_RS08455 WP_001829272.1 1815620..1816195(-) (comK/comK1) [Staphylococcus epidermidis strain SEA37]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=871277 SHJJP9001_RS08455 WP_001829272.1 1815620..1816195(-) (comK/comK1) [Staphylococcus epidermidis strain SEA37]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743