Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   WAB15_RS29850 Genome accession   NZ_CP147982
Coordinates   6616396..6617517 (+) Length   373 a.a.
NCBI ID   WP_399150049.1    Uniprot ID   A0ABZ2QWP9
Organism   Streptomyces sp. BP-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6611396..6622517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAB15_RS29830 (WAB15_29805) - 6611796..6613001 (+) 1206 WP_407289318.1 AI-2E family transporter -
  WAB15_RS29835 (WAB15_29810) - 6613044..6613319 (-) 276 WP_399150992.1 hypothetical protein -
  WAB15_RS29840 (WAB15_29815) - 6613453..6614598 (-) 1146 WP_407289319.1 GDSL-type esterase/lipase family protein -
  WAB15_RS29845 (WAB15_29820) - 6615027..6616073 (+) 1047 WP_407288099.1 LLM class flavin-dependent oxidoreductase -
  WAB15_RS29850 (WAB15_29825) recA 6616396..6617517 (+) 1122 WP_399150049.1 recombinase RecA Machinery gene
  WAB15_RS29855 (WAB15_29830) recX 6617524..6618177 (+) 654 WP_399150050.1 recombination regulator RecX -
  WAB15_RS29860 (WAB15_29835) - 6618567..6618947 (-) 381 WP_407288100.1 rhodanese-like domain-containing protein -
  WAB15_RS29865 (WAB15_29840) - 6619039..6619575 (-) 537 WP_407288101.1 cysteine dioxygenase -
  WAB15_RS29870 (WAB15_29845) - 6619657..6619743 (-) 87 WP_311044721.1 putative leader peptide -
  WAB15_RS29875 (WAB15_29850) - 6619736..6621580 (-) 1845 WP_407288102.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39276.76 Da        Isoelectric Point: 6.8984

>NTDB_id=863428 WAB15_RS29850 WP_399150049.1 6616396..6617517(+) (recA) [Streptomyces sp. BP-8]
MAGTDREKALDAALAQIERQFGKGAVMRMGERSKEPIEVIPTGSTALDVALGVGGLPRGRVIEVYGPESSGKTTLTLHAV
ANAQKAGGAVAFIDAEHALDPEYAKKLGVDTDALILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVSPPFKQAEFDILYGQGISREGGLIDMGVEHGFIRKSGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGIGVKPQDPAAEPGADAAGAAAEPAAAAPAPAAKGAKASKAAAAKS

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=863428 WAB15_RS29850 WP_399150049.1 6616396..6617517(+) (recA) [Streptomyces sp. BP-8]
ATGGCAGGCACTGACCGCGAGAAGGCGCTGGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCCGTGAT
GCGCATGGGGGAGCGGTCCAAGGAGCCCATCGAGGTCATCCCGACCGGATCCACCGCCCTCGACGTCGCGCTCGGCGTCG
GCGGCCTCCCCCGCGGCCGCGTCATCGAGGTCTACGGACCGGAGTCCTCCGGTAAGACGACCCTGACCCTGCACGCCGTC
GCGAACGCCCAGAAGGCCGGCGGCGCCGTCGCGTTCATCGATGCCGAGCACGCGCTCGACCCCGAGTACGCCAAGAAGCT
CGGCGTGGACACCGACGCCCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAAATCGTGGACATGCTGGTGC
GCTCCGGCGCGCTGGACCTCATCGTGATCGACTCCGTCGCCGCCCTGGTGCCGCGGGCCGAGATCGAGGGCGAGATGGGC
GACTCCCACGTCGGCCTCCAGGCCCGGCTGATGAGCCAGGCCCTGCGCAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACGACCGGTGGCCGCG
CGCTGAAGTTCTACGCTTCGGTGCGTCTCGACATCCGCCGTATCGAGACCCTCAAGGACGGCACGGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCTCCCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGTGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCATCCGCAAGTCTGGCGCTTGGTACACCTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCGGATCTCGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTCGGGATCGGCGTCAAGCCGCAGGACCCGGCGGCGGAGCCCGGTGCGGACGCCGCGGGCGC
GGCCGCCGAGCCGGCCGCCGCGGCCCCGGCACCGGCGGCCAAGGGCGCCAAGGCTTCCAAGGCCGCCGCGGCCAAGAGCT
AG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.205

91.689

0.598
  recA Neisseria gonorrhoeae strain FA1090

68.224

86.059

0.587
  recA Neisseria gonorrhoeae MS11

68.224

86.059

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

66.564

87.399

0.582
  recA Ralstonia pseudosolanacearum GMI1000

69.01

83.914

0.579
  recA Staphylococcus aureus strain ATCC 12600

66.258

87.399

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

63.881

89.812

0.574
  recA Acinetobacter baumannii D1279779

65.944

86.595

0.571
  recA Acinetobacter nosocomialis M2

65.635

86.595

0.568
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.325

86.595

0.566
  recA Acinetobacter baylyi ADP1

65.325

86.595

0.566
  recA Vibrio cholerae strain A1552

65.325

86.595

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

87.399

0.56
  recA Streptococcus thermophilus LMG 18311

60.411

91.421

0.552
  recA Streptococcus thermophilus LMD-9

60.411

91.421

0.552
  recA Streptococcus pyogenes NZ131

62.424

88.472

0.552
  recA Helicobacter pylori strain NCTC11637

63.077

87.131

0.55
  recA Helicobacter pylori 26695

63.077

87.131

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

88.204

0.55
  recA Glaesserella parasuis strain SC1401

63.354

86.327

0.547
  recA Streptococcus mutans UA159

61.631

88.74

0.547
  recA Streptococcus mitis NCTC 12261

61.329

88.74

0.544
  recA Streptococcus mitis SK321

61.329

88.74

0.544
  recA Lactococcus lactis subsp. cremoris KW2

61.027

88.74

0.542
  recA Streptococcus pneumoniae R6

61.027

88.74

0.542
  recA Streptococcus pneumoniae R36A

61.027

88.74

0.542
  recA Streptococcus pneumoniae Rx1

61.027

88.74

0.542
  recA Streptococcus pneumoniae D39

61.027

88.74

0.542
  recA Streptococcus pneumoniae TIGR4

61.027

88.74

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.25

94.37

0.531