Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   Q3V76_RS03235 Genome accession   NZ_CP130541
Coordinates   634088..634657 (+) Length   189 a.a.
NCBI ID   WP_000872872.1    Uniprot ID   A0AB73JJN0
Organism   Staphylococcus aureus strain SA09-SX     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 629088..639657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V76_RS03210 cysE 630301..630948 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  Q3V76_RS03215 cysS 630932..632332 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  Q3V76_RS03220 - 632325..632729 (+) 405 WP_000370186.1 Mini-ribonuclease 3 -
  Q3V76_RS03225 rlmB 632737..633483 (+) 747 WP_000390339.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  Q3V76_RS03230 - 633483..634007 (+) 525 WP_000664738.1 NYN domain-containing protein -
  Q3V76_RS03235 sigH 634088..634657 (+) 570 WP_000872872.1 sigma-70 family RNA polymerase sigma factor Regulator
  Q3V76_RS03240 rpmG 634772..634915 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  Q3V76_RS03245 secE 634971..635153 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  Q3V76_RS03250 nusG 635166..635714 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  Q3V76_RS03255 rplK 635895..636317 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  Q3V76_RS03260 rplA 636525..637217 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  Q3V76_RS03265 rplJ 637489..637989 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  Q3V76_RS03270 rplL 638032..638400 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  Q3V76_RS03275 - 638575..639183 (+) 609 WP_000020296.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=859950 Q3V76_RS03235 WP_000872872.1 634088..634657(+) (sigH) [Staphylococcus aureus strain SA09-SX]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRIDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=859950 Q3V76_RS03235 WP_000872872.1 634088..634657(+) (sigH) [Staphylococcus aureus strain SA09-SX]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATAGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979