Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q3V80_RS10110 Genome accession   NZ_CP130515
Coordinates   2049571..2050041 (-) Length   156 a.a.
NCBI ID   WP_000610650.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA28-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2044571..2055041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V80_RS10055 - 2045040..2045339 (-) 300 WP_000988332.1 HNH endonuclease -
  Q3V80_RS10060 - 2045571..2045987 (-) 417 WP_000590122.1 hypothetical protein -
  Q3V80_RS10065 - 2046015..2046215 (-) 201 WP_000265042.1 DUF1514 family protein -
  Q3V80_RS10070 - 2046335..2046589 (-) 255 WP_000370292.1 DUF1024 family protein -
  Q3V80_RS10075 - 2046582..2046866 (-) 285 WP_001105620.1 hypothetical protein -
  Q3V80_RS10080 - 2046863..2047312 (-) 450 WP_000982708.1 YopX family protein -
  Q3V80_RS10085 - 2047377..2047625 (-) 249 WP_001126836.1 phi PVL orf 51-like protein -
  Q3V80_RS10090 - 2047626..2047997 (-) 372 WP_000101268.1 SA1788 family PVL leukocidin-associated protein -
  Q3V80_RS10095 - 2048010..2048414 (-) 405 WP_000401976.1 RusA family crossover junction endodeoxyribonuclease -
  Q3V80_RS10100 - 2048423..2048641 (-) 219 WP_000338530.1 hypothetical protein -
  Q3V80_RS10105 - 2048648..2049541 (-) 894 WP_000148326.1 DnaD domain-containing protein -
  Q3V80_RS10110 ssbA 2049571..2050041 (-) 471 WP_000610650.1 single-stranded DNA-binding protein Machinery gene
  Q3V80_RS10115 - 2050042..2050659 (-) 618 WP_073394849.1 MBL fold metallo-hydrolase -
  Q3V80_RS10120 - 2050740..2051660 (-) 921 WP_000138475.1 recombinase RecT -
  Q3V80_RS10125 - 2051662..2053605 (-) 1944 WP_000700560.1 AAA family ATPase -
  Q3V80_RS10130 - 2053614..2053877 (-) 264 WP_001205732.1 hypothetical protein -
  Q3V80_RS10135 - 2053886..2054146 (-) 261 WP_000291488.1 DUF1108 family protein -
  Q3V80_RS10140 - 2054239..2054400 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  Q3V80_RS10145 - 2054397..2054717 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17658.50 Da        Isoelectric Point: 4.9628

>NTDB_id=859161 Q3V80_RS10110 WP_000610650.1 2049571..2050041(-) (ssbA) [Staphylococcus aureus strain SA28-SX]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=859161 Q3V80_RS10110 WP_000610650.1 2049571..2050041(-) (ssbA) [Staphylococcus aureus strain SA28-SX]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAATCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

31.492

100

0.365
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365