Detailed information NTG0856534

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QZL43_RS14125
• Genome accession: NZ_CP129938
• Coordinates: 3045098..3046204 (-)
• Length: 368 a.a.
• NCBI ID: WP_042771568.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM21A
• Function: type IV pilus retraction (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3040098..3051204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL43_RS14095	-	3040752..3041249 (+)	498	WP_021453096.1	SprT family zinc-dependent metalloprotease	-
QZL43_RS14100	endA	3041369..3042064 (+)	696	WP_308384749.1	deoxyribonuclease I	-
QZL43_RS14105	rsmE	3042189..3042920 (+)	732	WP_017449132.1	16S rRNA (uracil(1498)-N(3))-methyltransferase	-
QZL43_RS14110	gshB	3042935..3043885 (+)	951	WP_005425823.1	glutathione synthase	-
QZL43_RS14115	-	3043999..3044562 (+)	564	WP_005461717.1	YqgE/AlgH family protein	-
QZL43_RS14120	ruvX	3044611..3045036 (+)	426	WP_005461715.1	Holliday junction resolvase RuvX	-
QZL43_RS14125	pilU	3045098..3046204 (-)	1107	WP_042771568.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QZL43_RS14130	pilT	3046235..3047275 (-)	1041	WP_005461712.1	type IV pilus twitching motility protein PilT	Machinery gene
QZL43_RS14135	-	3047304..3048017 (+)	714	WP_042771569.1	YggS family pyridoxal phosphate-dependent enzyme	-
QZL43_RS14140	proC	3048137..3048955 (+)	819	WP_042771570.1	pyrroline-5-carboxylate reductase	-
QZL43_RS14145	-	3049008..3049565 (+)	558	WP_005482440.1	YggT family protein	-
QZL43_RS14150	yggU	3049565..3049855 (+)	291	WP_005482461.1	DUF167 family protein YggU	-
QZL43_RS14155	-	3049983..3050414 (+)	432	WP_005461703.1	DUF4426 domain-containing protein	-
QZL43_RS14160	-	3050532..3051134 (+)	603	WP_005482459.1	XTP/dITP diphosphatase	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41417.73 Da
• Isoelectric Point: 7.2515

>NTDB_id=856534 QZL43_RS14125 WP_042771568.1 3045098..3046204(-) (pilU) [Vibrio parahaemolyticus strain BM21A]
MDLNKFLEGMLTLKASDLYITVGAPILFRVDGELRPQGEKLTEHDVAKLLDSAMDPDRRQVFRKSRESNFAIVRDCGRFR
VSAFFQRELPGAVIRRIETIIPTFEQLKLPLVLQDLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNSNKTGHILTVEDPI
EFVHEHKRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LMPKDQKEQFLFDLSMNLKGVIGQQLIRDKNGQGRHGVFEILLNSPRVSDLIRRGDLHELKSTMARSNEFGMLTFDQSLY
KLVMQGKISEEDALHSADSANDLRLMLKTQRGEPFSTGSLANVKIDMD

Nucleotide

• Length: 1107 bp

>NTDB_id=856534 QZL43_RS14125 WP_042771568.1 3045098..3046204(-) (pilU) [Vibrio parahaemolyticus strain BM21A]
ATGGATCTGAATAAATTTCTTGAAGGTATGTTGACGCTAAAAGCGTCGGATCTTTACATCACGGTTGGTGCGCCAATTCT
ATTTCGTGTGGATGGCGAATTGCGTCCGCAAGGGGAGAAACTCACCGAACATGATGTTGCAAAGTTGCTTGATAGCGCAA
TGGATCCGGATCGGCGTCAGGTGTTTCGCAAAAGCCGCGAATCAAACTTTGCTATCGTCAGAGATTGTGGTCGCTTCCGT
GTTAGTGCTTTTTTTCAGCGAGAACTGCCGGGTGCAGTTATTCGCCGTATCGAAACCATCATTCCTACTTTTGAGCAGTT
AAAACTGCCTTTAGTGCTGCAAGACTTAGCGATTGCCAAGCGTGGTTTGGTGCTGGTGGTCGGCGCGACTGGCTCGGGTA
AATCGACCACGATGGCGGCGATGACGGGCTATCGAAACAGCAACAAAACCGGTCACATCTTGACGGTCGAAGATCCGATC
GAATTTGTGCATGAGCATAAGCGTTGTATCGTGACTCAGCGTGAAGTGGGTTTGGATACCGAAAGCTATGAAGTCGCACT
GAAAAACTCGCTGCGCCAAGCGCCAGATATGATTTTGATTGGTGAGATCCGTAGCCGAGAAACGATGGAATACGCGATGA
CCTTCGCCGAAACGGGTCACTTGTGTATGGCAACGTTGCACGCCAACAACGCCAACCAAGCGTTAGAACGTATTCTCCAT
TTGATGCCTAAAGATCAAAAAGAGCAATTCTTGTTTGATTTGTCGATGAACCTAAAAGGCGTGATTGGTCAGCAGCTGAT
CCGTGATAAGAATGGTCAAGGGCGTCATGGTGTGTTTGAGATCTTGCTAAACAGCCCACGAGTGTCGGATTTGATCCGTC
GTGGTGATTTACACGAATTGAAATCAACCATGGCACGATCCAATGAGTTTGGCATGCTGACGTTTGACCAATCGCTCTAC
AAGTTGGTGATGCAAGGTAAGATCAGCGAAGAGGATGCACTGCACAGTGCGGATTCTGCCAACGATCTTCGTTTAATGCT
GAAAACACAGCGTGGTGAGCCGTTCTCTACAGGCAGTCTTGCCAACGTCAAAATCGATATGGATTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Vibrio cholerae strain A1552	82.609	100	0.826
pilU	Pseudomonas stutzeri DSM 10701	57.714	95.109	0.549
pilU	Acinetobacter baylyi ADP1	54.986	95.38	0.524
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.953	92.12	0.405
pilT	Acinetobacter nosocomialis M2	42.478	92.12	0.391
pilT	Acinetobacter baumannii D1279779	42.478	92.12	0.391
pilT	Acinetobacter baumannii strain A118	42.478	92.12	0.391
pilT	Legionella pneumophila strain Lp02	42.478	92.12	0.391
pilT	Legionella pneumophila strain ERS1305867	42.478	92.12	0.391
pilT	Pseudomonas aeruginosa PAK	42.183	92.12	0.389
pilT	Pseudomonas stutzeri DSM 10701	41.003	92.12	0.378
pilT	Acinetobacter baylyi ADP1	41.994	89.946	0.378
pilT	Vibrio cholerae strain A1552	41.018	90.761	0.372
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	41.018	90.761	0.372
pilT	Neisseria meningitidis 8013	40.361	90.217	0.364
pilT	Neisseria gonorrhoeae MS11	40.361	90.217	0.364