Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V8690_RS31645 Genome accession   NZ_CP146350
Coordinates   6760903..6762027 (+) Length   374 a.a.
NCBI ID   WP_338783501.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6755903..6767027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS31615 (V8690_31615) - 6756199..6757029 (+) 831 WP_338783496.1 AraC family transcriptional regulator -
  V8690_RS31620 (V8690_31620) - 6757053..6757775 (+) 723 WP_338783497.1 AzlC family ABC transporter permease -
  V8690_RS31625 (V8690_31625) - 6757772..6758083 (+) 312 WP_184989088.1 AzlD domain-containing protein -
  V8690_RS31630 (V8690_31630) - 6758084..6759028 (-) 945 WP_338783498.1 hypothetical protein -
  V8690_RS31635 (V8690_31635) - 6759109..6759303 (+) 195 WP_338783499.1 DUF3046 domain-containing protein -
  V8690_RS31640 (V8690_31640) - 6759388..6760671 (+) 1284 WP_338783500.1 AI-2E family transporter -
  V8690_RS31645 (V8690_31645) recA 6760903..6762027 (+) 1125 WP_338783501.1 recombinase RecA Machinery gene
  V8690_RS31650 (V8690_31650) recX 6762031..6762870 (+) 840 WP_338783502.1 recombination regulator RecX -
  V8690_RS31655 (V8690_31655) - 6762918..6763337 (-) 420 WP_338785522.1 rhodanese-like domain-containing protein -
  V8690_RS31660 (V8690_31660) - 6763355..6763918 (-) 564 WP_338783503.1 cysteine dioxygenase -
  V8690_RS31665 (V8690_31665) - 6764017..6765804 (-) 1788 WP_338783504.1 FAD-dependent monooxygenase -
  V8690_RS31670 (V8690_31670) - 6765981..6766877 (-) 897 WP_338783505.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 39628.18 Da        Isoelectric Point: 6.6647

>NTDB_id=855175 V8690_RS31645 WP_338783501.1 6760903..6762027(+) (recA) [Streptomyces sp. DG1A-41]
MAGTDREKALDAALAQIERQFGKGAVMRMGDRTKEPIEVIPTGSTALDVALGVGGLPRGRVVEIYGPESSGKTTLTLHAV
ANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAVGN
RTRCKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVRPEEPAAEPGTDAAVSPAPADAAAVPAPAAAKSAKAKATAAKS

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=855175 V8690_RS31645 WP_338783501.1 6760903..6762027(+) (recA) [Streptomyces sp. DG1A-41]
ATGGCAGGAACCGACCGCGAGAAGGCCCTGGATGCCGCTCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTCAT
GCGCATGGGTGACCGGACCAAGGAGCCCATCGAGGTCATCCCGACCGGATCCACCGCCCTCGACGTGGCCCTCGGCGTGG
GCGGCCTGCCCCGCGGCCGTGTCGTGGAGATCTATGGACCGGAGTCCTCCGGTAAGACCACCCTGACCCTGCACGCGGTG
GCGAACGCGCAGAAGGCCGGCGGCCAGGTCGCCTTCGTCGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTCATCCTCTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGAGCCCTCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGC
GACAGTCACGTGGGTCTTCAGGCCCGCCTGATGAGCCAGGCACTGCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCCTCGGTGCGCATCGACATCCGCCGCATCGAGACCCTGAAGGACGGCACGGAGGCAGTCGGCAAC
CGCACCCGCTGCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCACGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTCGAGCACGGCTTCGTCCGCAAGGCCGGTGCCTGGTACACGTACG
AGGGTGACCAGCTCGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTGAAGGACAACCCCGACCTGGCCAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTCGGCGTGCGTCCCGAGGAGCCGGCTGCCGAGCCGGGCACGGACGCCGCGGTCTC
CCCGGCACCGGCCGACGCCGCGGCGGTCCCCGCCCCGGCGGCGGCCAAGTCCGCCAAGGCCAAGGCCACCGCAGCCAAGA
GCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

65.797

92.246

0.607
  recA Neisseria gonorrhoeae MS11

65.797

92.246

0.607
  recA Pseudomonas stutzeri DSM 10701

68.308

86.898

0.594
  recA Ralstonia pseudosolanacearum GMI1000

69.968

83.69

0.586
  recA Acinetobacter baylyi ADP1

67.492

86.364

0.583
  recA Acinetobacter baumannii D1279779

67.492

86.364

0.583
  recA Acinetobacter nosocomialis M2

67.183

86.364

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

61.127

94.92

0.58
  recA Staphylococcus aureus strain ATCC 12600

66.564

87.166

0.58
  recA Vibrio cholerae strain A1552

65.455

88.235

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.455

88.235

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

87.166

0.575
  recA Helicobacter pylori 26695

62.059

90.909

0.564
  recA Helicobacter pylori strain NCTC11637

62.059

90.909

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.222

87.968

0.556
  recA Streptococcus mitis NCTC 12261

59.483

93.048

0.553
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

87.166

0.553
  recA Streptococcus pyogenes NZ131

62.236

88.503

0.551
  recA Streptococcus mutans UA159

61.934

88.503

0.548
  recA Streptococcus thermophilus LMG 18311

61.145

88.77

0.543
  recA Streptococcus thermophilus LMD-9

61.145

88.77

0.543
  recA Glaesserella parasuis strain SC1401

62.733

86.096

0.54
  recA Streptococcus pneumoniae R6

61.027

88.503

0.54
  recA Streptococcus pneumoniae TIGR4

61.027

88.503

0.54
  recA Streptococcus pneumoniae Rx1

61.027

88.503

0.54
  recA Streptococcus pneumoniae R36A

61.027

88.503

0.54
  recA Streptococcus pneumoniae D39

61.027

88.503

0.54
  recA Streptococcus mitis SK321

60.843

88.77

0.54
  recA Lactococcus lactis subsp. cremoris KW2

60.725

88.503

0.537
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

85.561

0.503