Detailed information NTG0846550

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QR722_RS03970
• Genome accession: NZ_CP128185
• Coordinates: 947695..948576 (-)
• Length: 293 a.a.
• NCBI ID: WP_286285462.1
• Uniprot ID: -
• Organism: Aliiglaciecola sp. LCG003
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 942695..953576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QR722_RS03940 (QR722_03940)	dsbC	942837..943562 (+)	726	WP_286285449.1	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	-
QR722_RS03945 (QR722_03945)	recJ	943628..945358 (+)	1731	WP_286285451.1	single-stranded-DNA-specific exonuclease RecJ	-
QR722_RS03950 (QR722_03950)	-	945430..945870 (-)	441	WP_286285453.1	hypothetical protein	-
QR722_RS03955 (QR722_03955)	yacG	945870..946100 (-)	231	WP_286285454.1	DNA gyrase inhibitor YacG	-
QR722_RS03960 (QR722_03960)	zapD	946126..946878 (-)	753	WP_286285456.1	cell division protein ZapD	-
QR722_RS03965 (QR722_03965)	coaE	947075..947698 (-)	624	WP_286285460.1	dephospho-CoA kinase	-
QR722_RS03970 (QR722_03970)	pilD	947695..948576 (-)	882	WP_286285462.1	A24 family peptidase	Machinery gene
QR722_RS03975 (QR722_03975)	pilC	948703..949911 (-)	1209	WP_286285464.1	type II secretion system F family protein	Machinery gene
QR722_RS03980 (QR722_03980)	-	949990..950400 (-)	411	WP_286285466.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QR722_RS03985 (QR722_03985)	nadC	950604..951440 (-)	837	WP_286285468.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QR722_RS03990 (QR722_03990)	-	951479..952006 (-)	528	WP_286285471.1	TIGR02281 family clan AA aspartic protease	-
QR722_RS03995 (QR722_03995)	ampD	952078..952629 (+)	552	WP_286285473.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
QR722_RS04000 (QR722_04000)	ampE	952667..953491 (+)	825	WP_286285475.1	beta-lactamase regulator AmpE	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32922.94 Da
• Isoelectric Point: 6.3234

>NTDB_id=846550 QR722_RS03970 WP_286285462.1 947695..948576(-) (pilD) [Aliiglaciecola sp. LCG003]
MPEIFQLLADSPPFFLAFVFFISLLVGSFLNVVIYRLPVMMENEWRDEYQSYFHPQQFEQQPKAAPFNLIKPDSTCPKCQ
HKIRAWENIPVISWLWLKGKCSACQNPISFRYPAIEAITALASVFVAFHFGYGLQGAAAVLLTWCLITLIFIDIDKMLLP
DQITLPLLWIGLLLSLNNVFINTEDAIIGALAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWVGWQHLPIVILLS
SFVGAIIGISYLAIKGKDKGSHIPFGPYLAIAGWLTLMYGSDIADMYIQWALA

Nucleotide

• Length: 882 bp

>NTDB_id=846550 QR722_RS03970 WP_286285462.1 947695..948576(-) (pilD) [Aliiglaciecola sp. LCG003]
ATGCCAGAGATTTTTCAACTACTTGCCGACTCACCACCGTTCTTTCTAGCCTTTGTATTTTTCATTAGTTTACTGGTTGG
CAGTTTTTTAAATGTAGTTATTTATCGTCTGCCAGTGATGATGGAAAATGAGTGGAGGGATGAATATCAATCATATTTTC
ATCCACAACAATTCGAGCAGCAACCTAAAGCTGCTCCCTTTAATCTAATTAAGCCAGATTCAACTTGCCCTAAATGCCAG
CACAAAATTCGCGCCTGGGAAAATATTCCAGTAATCAGTTGGTTGTGGTTAAAAGGTAAGTGCAGTGCTTGCCAAAATCC
CATTTCGTTTCGTTACCCAGCCATCGAAGCCATTACGGCATTAGCATCTGTTTTCGTTGCTTTTCATTTTGGCTATGGGC
TACAAGGCGCAGCGGCAGTGCTGTTAACTTGGTGTTTGATTACACTTATCTTTATTGATATCGATAAAATGCTGCTTCCA
GACCAAATTACCCTACCGCTACTGTGGATTGGTTTGCTACTAAGTTTAAACAACGTGTTTATCAATACCGAAGACGCCAT
TATCGGTGCGCTAGCCGGTTATCTGAGTTTGTGGAGCGTGTATTGGTTGTTCAAGTTATTAACCGGCAAGGAAGGCATGG
GCTACGGCGATTTCAAGTTGCTCGCCGCTCTAGGTGCTTGGGTTGGATGGCAGCACTTGCCAATTGTCATTTTGTTATCA
TCTTTCGTTGGTGCCATCATCGGCATTAGCTATTTGGCAATTAAAGGTAAAGATAAAGGCAGCCATATTCCATTTGGACC
ATACCTAGCTATCGCCGGGTGGTTAACCCTAATGTATGGCTCTGATATCGCTGATATGTATATTCAATGGGCACTGGCAT
GA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-130)

• Type IV leader peptidase family (Peptidase_A24) (141-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	55.245	97.611	0.539
pilD	Vibrio cholerae strain A1552	56.391	90.785	0.512
pilD	Acinetobacter baumannii D1279779	52.593	92.15	0.485
pilD	Acinetobacter nosocomialis M2	51.852	92.15	0.478
pilD	Neisseria gonorrhoeae MS11	47.529	89.761	0.427