Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VXF94_RS00980 Genome accession   NZ_CP143956
Coordinates   290770..291813 (-) Length   347 a.a.
NCBI ID   WP_013352318.1    Uniprot ID   Q8GJG2
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 285770..296813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS00960 (VXF94_00960) spoVS 286255..286515 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  VXF94_RS00965 (VXF94_00965) ymdB 286715..287509 (-) 795 WP_013352320.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  VXF94_RS00970 (VXF94_00970) rny 287571..289131 (-) 1561 Protein_193 ribonuclease Y -
  VXF94_RS00975 (VXF94_00975) - 289422..290603 (-) 1182 WP_013352319.1 serine hydrolase domain-containing protein -
  VXF94_RS00980 (VXF94_00980) recA 290770..291813 (-) 1044 WP_013352318.1 recombinase RecA Machinery gene
  VXF94_RS00985 (VXF94_00985) cinA 291985..293235 (-) 1251 WP_013352317.1 competence/damage-inducible protein A Machinery gene
  VXF94_RS00990 (VXF94_00990) pgsA 293253..293834 (-) 582 WP_013352316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VXF94_RS00995 (VXF94_00995) - 293908..294795 (-) 888 WP_013352315.1 helix-turn-helix domain-containing protein -
  VXF94_RS01000 (VXF94_01000) - 294814..295605 (-) 792 WP_013352314.1 DUF3388 domain-containing protein -
  VXF94_RS01005 (VXF94_01005) - 295733..295990 (-) 258 WP_003154150.1 DUF3243 domain-containing protein -
  VXF94_RS01010 (VXF94_01010) ymfI 296066..296794 (-) 729 WP_013352313.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37961.15 Da        Isoelectric Point: 4.7528

>NTDB_id=845535 VXF94_RS00980 WP_013352318.1 290770..291813(-) (recA) [Bacillus amyloliquefaciens strain Fad 108]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVTEKAEEVQEELEFEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=845535 VXF94_RS00980 WP_013352318.1 290770..291813(-) (recA) [Bacillus amyloliquefaciens strain Fad 108]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGAGAAAAAACGGATACAAGAATTTCAACGGTGCCGAGCGGTTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTATACGGACCTGAAAGCTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCCGAGCATGCTCTTGATCCTGTGTACGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTGCTGCTTTCTCAGCCGGATACGGGAGAGCAGGCGCTGGAGATTGCTGAAGCGCTGGTGCGAAGCG
GAGCTGTCGATATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGATTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGCCGCGCGCTGA
AATTCTATTCTTCCGTGCGTCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCAGGGCAACGACGTTATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTTGATATCGTGCAGAAAAGCGGCTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGACAGGGCCGTGAAAACGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAAGAACAA
ATCCGTGAACATTACGGTTTGGACAATAACGGTGTTACGGAAAAAGCGGAAGAAGTTCAGGAAGAGCTTGAATTCGAAGA
ATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8GJG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.701

100

0.98
  recA Staphylococcus aureus strain ATCC 12600

74.277

99.712

0.741
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

94.236

0.706
  recA Streptococcus pneumoniae D39

67.251

98.559

0.663
  recA Streptococcus pneumoniae R36A

67.251

98.559

0.663
  recA Streptococcus pneumoniae Rx1

67.251

98.559

0.663
  recA Streptococcus pneumoniae R6

67.251

98.559

0.663
  recA Streptococcus pneumoniae TIGR4

67.251

98.559

0.663
  recA Streptococcus thermophilus LMD-9

65.143

100

0.657
  recA Streptococcus mutans UA159

65.988

99.135

0.654
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus thermophilus LMG 18311

67.477

94.813

0.64
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Helicobacter pylori 26695

62.974

98.847

0.622
  recA Helicobacter pylori strain NCTC11637

62.974

98.847

0.622
  recA Neisseria gonorrhoeae MS11

65.443

94.236

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.443

94.236

0.617
  recA Ralstonia pseudosolanacearum GMI1000

64.634

94.524

0.611
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599
  recA Glaesserella parasuis strain SC1401

60.29

99.424

0.599
  recA Pseudomonas stutzeri DSM 10701

60.997

98.271

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Acinetobacter baylyi ADP1

59.42

99.424

0.591
  recA Acinetobacter baumannii D1279779

59.42

99.424

0.591
  recA Acinetobacter nosocomialis M2

62.733

92.795

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

93.084

0.562