Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VR625_RS25900 Genome accession   NZ_CP142147
Coordinates   5823428..5824558 (+) Length   376 a.a.
NCBI ID   WP_345983310.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5818428..5829558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS25895 - 5821266..5822855 (-) 1590 WP_161033115.1 S8 family peptidase -
  VR625_RS25900 recA 5823428..5824558 (+) 1131 WP_345983310.1 recombinase RecA Machinery gene
  VR625_RS25905 recX 5824562..5825332 (+) 771 WP_345983311.1 recombination regulator RecX -
  VR625_RS25910 - 5825526..5826191 (-) 666 WP_345983312.1 hypothetical protein -
  VR625_RS25915 - 5826357..5826770 (-) 414 WP_225976947.1 rhodanese-like domain-containing protein -
  VR625_RS25920 - 5826767..5827381 (-) 615 WP_109163264.1 cysteine dioxygenase -
  VR625_RS25925 - 5827574..5829280 (-) 1707 WP_345983313.1 FAD-dependent monooxygenase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 39671.21 Da        Isoelectric Point: 6.1842

>NTDB_id=839977 VR625_RS25900 WP_345983310.1 5823428..5824558(+) (recA) [Streptomyces sp. DSS69]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKLGGSVAFIDAEHALDPEYAKKLGVDIDSLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPEAEPAEPGAEGAAAAGTAAEGAAKPVTAAATKAKPAKTAAAKS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=839977 VR625_RS25900 WP_345983310.1 5823428..5824558(+) (recA) [Streptomyces sp. DSS69]
ATGGCAGGAACCGACCGCGAGAAGGCGCTGGACGCCGCACTCGCACAGATTGAACGACAGTTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCCAACGAGCCCATCGAGGTGATCCCCACGGGATCGACGGCCCTGGACGTGGCGCTGGGCGTCG
GCGGTCTGCCGCGTGGCCGTGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCGCAGAAGCTCGGCGGTTCGGTGGCGTTCATCGACGCCGAGCACGCGCTGGACCCGGAGTACGCCAAGAAGCT
CGGCGTGGACATCGACAGCCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCGCTGGAGATCGTCGACATGCTGGTCC
GCTCCGGTGCCCTGGACCTGATCGTGATCGACTCCGTCGCGGCCCTGGTGCCCCGTGCGGAGATCGAGGGCGAGATGGGT
GACTCGCACGTGGGTCTCCAGGCCCGTCTGATGAGCCAGGCCCTCCGTAAGATCACCAGCGCGCTCAACCAGTCGAAGAC
GACGGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGGGTGATGTTCGGTTCGCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCGTCGGTGCGTCTGGACATCCGGCGGATCGAGACGCTGAAGGACGGGACCGACGCGGTCGGCAAC
CGGACCCGGGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGGCAGGG
CATCAGCCGTGAGGGCGGGCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGTAACTTCCTCAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCCTCGAGAAGCTCGGCGTCGGCGTCCGGCCGGAGGCCGAGCCCGCCGAGCCCGGTGCGGAAGGAGCGGCGGC
CGCGGGGACGGCGGCGGAGGGTGCGGCGAAGCCGGTGACCGCTGCGGCCACCAAGGCGAAGCCGGCCAAGACCGCGGCGG
CCAAGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

65

90.426

0.588
  recA Pseudomonas stutzeri DSM 10701

67.385

86.436

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

86.702

0.582
  recA Ralstonia pseudosolanacearum GMI1000

69.968

83.245

0.582
  recA Neisseria gonorrhoeae MS11

68.125

85.106

0.58
  recA Neisseria gonorrhoeae strain FA1090

68.125

85.106

0.58
  recA Staphylococcus aureus strain ATCC 12600

66.564

86.702

0.577
  recA Acinetobacter baylyi ADP1

66.873

85.904

0.574
  recA Acinetobacter nosocomialis M2

66.873

85.904

0.574
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

85.904

0.572
  recA Vibrio cholerae strain A1552

66.563

85.904

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

63.69

89.362

0.569
  recA Streptococcus mutans UA159

62.84

88.032

0.553
  recA Streptococcus pyogenes NZ131

63.03

87.766

0.553
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

86.702

0.551
  recA Helicobacter pylori strain NCTC11637

61.424

89.628

0.551
  recA Helicobacter pylori 26695

61.424

89.628

0.551
  recA Streptococcus thermophilus LMD-9

62.236

88.032

0.548
  recA Streptococcus thermophilus LMG 18311

62.236

88.032

0.548
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

87.5

0.548
  recA Streptococcus mitis SK321

61.934

88.032

0.545
  recA Streptococcus mitis NCTC 12261

61.934

88.032

0.545
  recA Glaesserella parasuis strain SC1401

63.354

85.638

0.543
  recA Lactococcus lactis subsp. cremoris KW2

62.769

86.436

0.543
  recA Streptococcus pneumoniae TIGR4

61.631

88.032

0.543
  recA Streptococcus pneumoniae R36A

61.631

88.032

0.543
  recA Streptococcus pneumoniae Rx1

61.631

88.032

0.543
  recA Streptococcus pneumoniae D39

61.631

88.032

0.543
  recA Streptococcus pneumoniae R6

61.631

88.032

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

86.968

0.505