Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VR625_RS02630 Genome accession   NZ_CP142147
Coordinates   591524..592600 (+) Length   358 a.a.
NCBI ID   WP_345981398.1    Uniprot ID   -
Organism   Streptomyces sp. DSS69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 586524..597600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR625_RS02620 - 588231..588641 (-) 411 WP_109166934.1 Fur family transcriptional regulator -
  VR625_RS02625 katG 589013..591268 (+) 2256 WP_109166933.1 catalase/peroxidase HPI -
  VR625_RS02630 recA 591524..592600 (+) 1077 WP_345981398.1 recombinase RecA Machinery gene
  VR625_RS02635 - 592615..593019 (-) 405 WP_109166931.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  VR625_RS02640 - 594059..594163 (-) 105 WP_225976754.1 FAD-dependent oxidoreductase -
  VR625_RS02645 - 594160..594582 (-) 423 WP_030329995.1 arsenate reductase ArsC -
  VR625_RS02650 - 594676..594984 (+) 309 WP_030329993.1 metalloregulator ArsR/SmtB family transcription factor -
  VR625_RS02655 arsB 594981..596096 (+) 1116 WP_109166930.1 ACR3 family arsenite efflux transporter -
  VR625_RS02660 - 596093..596329 (+) 237 Protein_531 pyridine nucleotide-disulfide oxidoreductase -
  VR625_RS02665 - 596558..596662 (+) 105 Protein_532 MarR family transcriptional regulator -
  VR625_RS02670 - 596758..597264 (-) 507 WP_109166928.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38195.37 Da        Isoelectric Point: 5.7837

>NTDB_id=839922 VR625_RS02630 WP_345981398.1 591524..592600(+) (recA) [Streptomyces sp. DSS69]
MAGTDHEKALDTALAQIERKFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKAGGSVAFIDAEHALDPEYAKKLGVDTDNLILSQPDNGEQALEITDILIRSGAIDLIVIDSVAALVPRAEIEGEMG
DSHMGLQARLMSQALRKITSALNQTRTTAIFINQLREKIGVMFSSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPEAATTEGTAPSPIPDGARASAGTTA

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=839922 VR625_RS02630 WP_345981398.1 591524..592600(+) (recA) [Streptomyces sp. DSS69]
ATGGCAGGAACCGACCACGAGAAGGCGCTGGACACCGCGCTCGCACAGATCGAGCGGAAGTTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCCAACGAGCCCATCGAGGTGATCCCCACGGGATCGACGGCCCTGGACGTGGCGCTGGGCGTCG
GCGGTCTGCCGCGTGGCCGTGTGGTGGAGGTGTACGGGCCGGAGTCCTCCGGTAAGACGACGCTGACGCTGCACGCCGTG
GCGAACGCACAGAAGGCCGGCGGTTCGGTGGCGTTCATCGACGCCGAGCACGCGCTGGACCCGGAGTACGCCAAGAAGCT
CGGCGTGGACACGGACAATCTCATCCTGTCCCAGCCGGACAACGGCGAACAGGCGCTGGAGATCACCGACATCCTCATCC
GCTCCGGCGCGATCGACCTGATCGTGATCGACTCCGTCGCGGCCCTGGTGCCCCGTGCGGAGATCGAGGGCGAGATGGGC
GACTCCCACATGGGTCTCCAGGCCCGTCTGATGAGCCAGGCCCTCCGTAAGATCACCAGCGCCCTCAACCAGACGAGGAC
CACGGCGATCTTCATCAACCAGCTGCGCGAGAAGATCGGGGTGATGTTCAGTTCGCCGGAGACCACGACCGGTGGCCGGG
CGCTGAAGTTCTACGCGTCGGTGCGTCTGGACATCCGGCGGATCGAGACGCTGAAGGACGGGACCGACGCGGTCGGCAAC
CGGACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGGCAGGG
CATCAGCCGTGAGGGCGGGCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCCTCGAGAAGCTCGGCGTCGGCGTCCGGCCGGAAGCCGCGACCACCGAGGGCACGGCCCCCTCCCCGATCCC
TGACGGCGCCCGGGCCTCGGCGGGGACCACCGCCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

65.976

94.413

0.623
  recA Neisseria gonorrhoeae strain FA1090

65.976

94.413

0.623
  recA Pseudomonas stutzeri DSM 10701

63.081

96.089

0.606
  recA Ralstonia pseudosolanacearum GMI1000

69.01

87.43

0.603
  recA Acinetobacter baylyi ADP1

63.343

95.251

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

60.857

97.765

0.595
  recA Acinetobacter baumannii D1279779

65.944

90.223

0.595
  recA Staphylococcus aureus strain ATCC 12600

65.337

91.061

0.595
  recA Acinetobacter nosocomialis M2

65.635

90.223

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.724

91.061

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.325

90.223

0.589
  recA Vibrio cholerae strain A1552

65.325

90.223

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

91.899

0.575
  recA Streptococcus mutans UA159

61.934

92.458

0.573
  recA Helicobacter pylori strain NCTC11637

63.077

90.782

0.573
  recA Helicobacter pylori 26695

63.077

90.782

0.573
  recA Streptococcus pyogenes NZ131

62.121

92.179

0.573
  recA Streptococcus mitis SK321

60.117

95.251

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.467

90.223

0.573
  recA Glaesserella parasuis strain SC1401

63.24

89.665

0.567
  recA Streptococcus thermophilus LMD-9

62.154

90.782

0.564
  recA Streptococcus thermophilus LMG 18311

62.154

90.782

0.564
  recA Streptococcus mitis NCTC 12261

61.027

92.458

0.564
  recA Streptococcus pneumoniae TIGR4

60.725

92.458

0.561
  recA Streptococcus pneumoniae R36A

60.725

92.458

0.561
  recA Streptococcus pneumoniae Rx1

60.725

92.458

0.561
  recA Streptococcus pneumoniae D39

60.725

92.458

0.561
  recA Streptococcus pneumoniae R6

60.725

92.458

0.561
  recA Lactococcus lactis subsp. cremoris KW2

61.846

90.782

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.716

91.341

0.536