Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QOM10_RS21590 Genome accession   NZ_CP126691
Coordinates   4917219..4917854 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. P108     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4912219..4922854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM10_RS21555 (QOM10_21540) - 4912553..4913023 (-) 471 WP_003227073.1 (2Fe-2S)-binding protein -
  QOM10_RS21560 (QOM10_21545) murB 4913336..4914355 (-) 1020 WP_127929341.1 UDP-N-acetylmuramate dehydrogenase -
  QOM10_RS21565 (QOM10_21550) - 4914352..4914816 (-) 465 WP_127929342.1 low molecular weight protein-tyrosine-phosphatase -
  QOM10_RS21570 (QOM10_21555) kdsB 4914816..4915580 (-) 765 WP_127929343.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QOM10_RS21575 (QOM10_21560) - 4915577..4915762 (-) 186 WP_003174668.1 Trm112 family protein -
  QOM10_RS21580 (QOM10_21565) lpxK 4915784..4916794 (-) 1011 WP_150750552.1 tetraacyldisaccharide 4'-kinase -
  QOM10_RS21585 (QOM10_21570) - 4916794..4917222 (-) 429 WP_127929345.1 ExbD/TolR family protein -
  QOM10_RS21590 (QOM10_21575) exbB 4917219..4917854 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QOM10_RS21595 (QOM10_21580) comA 4917955..4920189 (-) 2235 WP_160041422.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QOM10_RS21600 (QOM10_21585) - 4920326..4920844 (+) 519 WP_007908202.1 DUF2062 domain-containing protein -
  QOM10_RS21605 (QOM10_21590) - 4920988..4921767 (-) 780 WP_008087860.1 ABC transporter permease -
  QOM10_RS21610 (QOM10_21595) - 4921764..4922696 (-) 933 WP_127929347.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=839446 QOM10_RS21590 WP_007908216.1 4917219..4917854(-) (exbB) [Pseudomonas sp. P108]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=839446 QOM10_RS21590 WP_007908216.1 4917219..4917854(-) (exbB) [Pseudomonas sp. P108]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAACGCCTGTGGACACTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCCGCCCGCGTCATCCACGAGCTCGAACGCTACGT
CAATGCGCTGGGCACCATCGCCGCGATGTCGCCGCTGCTCGGTCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCGCATTCACCGGTTCCGGTATGACCACCAATGCTTCGGTGCTGGCGGGTGGTATCTCCAAGGCGCTGATCACCACAGCA
GCAGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCAACGCCGCATTGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGTGACCGTGACGTCGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848