Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VA211_RS06500 Genome accession   NZ_CP141771
Coordinates   1333091..1334134 (-) Length   347 a.a.
NCBI ID   WP_000963126.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328091..1339134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA211_RS06470 - 1328333..1329451 (+) 1119 WP_324684868.1 glycosyltransferase family 8 protein -
  VA211_RS06475 - 1329448..1330404 (-) 957 WP_000952289.1 PDC sensor domain-containing protein -
  VA211_RS06480 - 1330426..1330914 (-) 489 WP_001164304.1 shikimate kinase -
  VA211_RS06485 - 1330919..1331515 (-) 597 WP_001868216.1 AMIN domain-containing protein -
  VA211_RS06490 - 1331531..1331806 (-) 276 WP_324684873.1 hypothetical protein -
  VA211_RS06495 eno 1331799..1333079 (-) 1281 WP_000955620.1 phosphopyruvate hydratase -
  VA211_RS06500 recA 1333091..1334134 (-) 1044 WP_000963126.1 recombinase RecA Machinery gene
  VA211_RS06505 - 1334233..1335099 (+) 867 WP_324684875.1 menaquinone biosynthesis family protein -
  VA211_RS06510 - 1335096..1335863 (-) 768 WP_180425680.1 hypothetical protein -
  VA211_RS06515 - 1335951..1336532 (-) 582 WP_245018621.1 hypothetical protein -
  VA211_RS06520 - 1336544..1337128 (-) 585 WP_108247568.1 hypothetical protein -
  VA211_RS06525 - 1337229..1337435 (-) 207 WP_000670531.1 DUF4006 family protein -
  VA211_RS06530 ccoP 1337446..1338324 (-) 879 WP_324684883.1 cytochrome-c oxidase, cbb3-type subunit III -
  VA211_RS06535 - 1338326..1338544 (-) 219 WP_001868213.1 cytochrome c oxidase, cbb3-type, CcoQ subunit -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37669.40 Da        Isoelectric Point: 5.7176

>NTDB_id=837807 VA211_RS06500 WP_000963126.1 1333091..1334134(-) (recA) [Helicobacter pylori strain P08204]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDSISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVHYAKRLGVDTENLLVSQPDTGEQALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALANE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=837807 VA211_RS06500 WP_000963126.1 1333091..1334134(-) (recA) [Helicobacter pylori strain P08204]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACTCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGCAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTTTAAGCTTGCATATT
ATTGCAGAATGCCAAAAAAATGGCGGCGTGTGCGCGTTTATTGACGCTGAGCATGCCTTAGATGTGCATTATGCTAAGAG
GTTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCTGATACAGGCGAGCAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTAGTGGTGGTGGATTCCGTAGCGGCTCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTTTTACACAAGATGAA
CACCACTTTAATTTTTATCAATCAAATCAGAATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACCGGAG
GTAATGCTTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGGATTGCGGCTTTAAAACAAAACGAACAGCATATT
GGAAATAGGGCTAAAGCCAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAGGGGATTTCTAAAGAGGGCGAAATCATTGATTATGGCGTGAAATTAGACATTGTGGATAAGAGTGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGCCGAGAAAACGCTAAAGCCTTACTGAAAGAAGACAAAGCCCTAGCGAATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCAGATGAGCCTTTAGAAGAAATGGA
ATAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

99.424

100

0.994
  recA Helicobacter pylori 26695

99.424

100

0.994
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.963

94.524

0.746
  recA Staphylococcus aureus strain ATCC 12600

63.636

98.271

0.625
  recA Neisseria gonorrhoeae MS11

66.462

93.66

0.622
  recA Neisseria gonorrhoeae strain FA1090

66.462

93.66

0.622
  recA Acinetobacter nosocomialis M2

62.865

98.559

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.458

95.677

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

93.66

0.611
  recA Acinetobacter baumannii D1279779

63.914

94.236

0.602
  recA Acinetobacter baylyi ADP1

63.609

94.236

0.599
  recA Ralstonia pseudosolanacearum GMI1000

61.905

96.83

0.599
  recA Pseudomonas stutzeri DSM 10701

60.526

98.559

0.597
  recA Vibrio cholerae strain A1552

61.31

96.83

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.31

96.83

0.594
  recA Glaesserella parasuis strain SC1401

60.671

94.524

0.573
  recA Streptococcus pneumoniae R6

55.84

100

0.565
  recA Streptococcus pneumoniae R36A

55.84

100

0.565
  recA Streptococcus pneumoniae Rx1

55.84

100

0.565
  recA Streptococcus pneumoniae D39

55.84

100

0.565
  recA Streptococcus pneumoniae TIGR4

55.84

100

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

54.622

100

0.562
  recA Streptococcus pyogenes NZ131

57.576

95.101

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.813

0.548
  recA Streptococcus mitis NCTC 12261

57.447

94.813

0.545
  recA Streptococcus mitis SK321

57.447

94.813

0.545
  recA Streptococcus thermophilus LMD-9

56.667

95.101

0.539
  recA Streptococcus thermophilus LMG 18311

56.667

95.101

0.539
  recA Streptococcus mutans UA159

55.988

96.254

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.442

93.948

0.53