Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QNH41_RS12135 Genome accession   NZ_CP126100
Coordinates   2377881..2378501 (+) Length   206 a.a.
NCBI ID   WP_024121833.1    Uniprot ID   A0A9Q6A9A0
Organism   Bacillus halotolerans strain LN2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2372881..2383501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH41_RS12095 (QNH41_12095) - 2374019..2374525 (-) 507 WP_106020332.1 PTS glucose transporter subunit IIA -
  QNH41_RS12100 (QNH41_12100) - 2374662..2375081 (+) 420 WP_106020010.1 Hsp20/alpha crystallin family protein -
  QNH41_RS12105 (QNH41_12105) - 2375103..2375477 (-) 375 WP_024121828.1 YppG family protein -
  QNH41_RS12110 (QNH41_12110) - 2375665..2375853 (+) 189 WP_106020011.1 YppF family protein -
  QNH41_RS12115 (QNH41_12115) - 2375888..2376259 (-) 372 WP_024121830.1 YppE family protein -
  QNH41_RS12120 (QNH41_12120) - 2376305..2376550 (-) 246 WP_095713163.1 DUF5446 family protein -
  QNH41_RS12125 (QNH41_12125) sspM 2376748..2376852 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  QNH41_RS12130 (QNH41_12130) - 2376878..2377840 (-) 963 WP_283912412.1 DUF2515 domain-containing protein -
  QNH41_RS12135 (QNH41_12135) recU 2377881..2378501 (+) 621 WP_024121833.1 Holliday junction resolvase RecU Machinery gene
  QNH41_RS12140 (QNH41_12140) - 2378523..2381270 (+) 2748 WP_283912413.1 PBP1A family penicillin-binding protein -
  QNH41_RS12145 (QNH41_12145) - 2381343..2381837 (-) 495 WP_257987552.1 YpoC family protein -
  QNH41_RS12150 (QNH41_12150) nth 2381834..2382493 (-) 660 WP_010334708.1 endonuclease III -
  QNH41_RS12155 (QNH41_12155) dnaD 2382512..2383210 (-) 699 WP_185848882.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23934.13 Da        Isoelectric Point: 9.7224

>NTDB_id=835889 QNH41_RS12135 WP_024121833.1 2377881..2378501(+) (recU) [Bacillus halotolerans strain LN2]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFGQVYFLEADKLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=835889 QNH41_RS12135 WP_024121833.1 2377881..2378501(+) (recU) [Bacillus halotolerans strain LN2]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGTCAGGTTTATTTTTTAGAAGCCGATAAGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.087

100

0.971