Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QM317_RS10805 Genome accession   NZ_CP125861
Coordinates   2239605..2240000 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-03119     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2234605..2245000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM317_RS10775 (QM317_10760) - 2235807..2236211 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QM317_RS10780 (QM317_10765) - 2236606..2236698 (+) 93 WP_031867531.1 hypothetical protein -
  QM317_RS10785 (QM317_10770) - 2236830..2237063 (+) 234 WP_000384523.1 DUF1146 family protein -
  QM317_RS10790 (QM317_10775) murA 2237174..2238439 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QM317_RS10795 (QM317_10780) fabZ 2238473..2238913 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QM317_RS10800 (QM317_10785) - 2238971..2239411 (-) 441 WP_000846746.1 YwpF-like family protein -
  QM317_RS10805 (QM317_10790) ssb 2239605..2240000 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QM317_RS10810 (QM317_10795) sceD 2240389..2241084 (+) 696 WP_000752000.1 lytic transglycosylase SceD -
  QM317_RS10815 (QM317_10800) tenA 2241471..2242160 (+) 690 WP_000396067.1 thiaminase II -
  QM317_RS10820 (QM317_10805) thiD 2242153..2242983 (+) 831 WP_000594947.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QM317_RS10825 (QM317_10810) thiM 2242967..2243758 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  QM317_RS10830 (QM317_10815) thiE 2243760..2244401 (+) 642 WP_000483164.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=833065 QM317_RS10805 WP_000932694.1 2239605..2240000(+) (ssb) [Staphylococcus aureus strain 12-03119]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=833065 QM317_RS10805 WP_000932694.1 2239605..2240000(+) (ssb) [Staphylococcus aureus strain 12-03119]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992