Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   I3F59_RS16825 Genome accession   NZ_CP140097
Coordinates   3889150..3890277 (-) Length   375 a.a.
NCBI ID   WP_240137919.1    Uniprot ID   -
Organism   Streptomyces sp. MUM 178J     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3884150..3895277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3F59_RS16805 (I3F59_016805) - 3884632..3886227 (+) 1596 WP_240137915.1 FAD-dependent monooxygenase -
  I3F59_RS16810 (I3F59_016810) - 3886299..3887471 (-) 1173 WP_240137916.1 helix-turn-helix transcriptional regulator -
  I3F59_RS16815 (I3F59_016815) - 3887556..3887939 (+) 384 WP_240137917.1 hypothetical protein -
  I3F59_RS16820 (I3F59_016820) recX 3888574..3889146 (-) 573 WP_240137918.1 recombination regulator RecX -
  I3F59_RS16825 (I3F59_016825) recA 3889150..3890277 (-) 1128 WP_240137919.1 recombinase RecA Machinery gene
  I3F59_RS16830 (I3F59_016830) - 3890496..3891605 (-) 1110 WP_275675060.1 AI-2E family transporter -
  I3F59_RS16835 (I3F59_016835) - 3892036..3892230 (-) 195 WP_240137920.1 DUF3046 domain-containing protein -
  I3F59_RS16840 (I3F59_016840) - 3892310..3893245 (+) 936 WP_240137921.1 hypothetical protein -
  I3F59_RS16845 (I3F59_016845) - 3893666..3893974 (-) 309 WP_240137922.1 AzlD domain-containing protein -
  I3F59_RS16850 (I3F59_016850) - 3893971..3894702 (-) 732 WP_240137942.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39675.12 Da        Isoelectric Point: 6.6647

>NTDB_id=833065 I3F59_RS16825 WP_240137919.1 3889150..3890277(-) (recA) [Streptomyces sp. MUM 178J]
MAGTDREKALDAALAQIERQFGKGAVMRMGERSKEPIEVIPTGSTALDVALGVGGLPRGRVVEIYGPESSGKTTLTLHAV
ANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAVGN
RTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKIKEKLGVGVMPDASDAEHGADAAGATTSAENAAKPAPASAAKAKTAKSAAAKG

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=833065 I3F59_RS16825 WP_240137919.1 3889150..3890277(-) (recA) [Streptomyces sp. MUM 178J]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCGCAGATTGAACGGCAATTCGGCAAGGGCGCCGTGAT
GCGCATGGGCGAGCGGTCGAAGGAGCCCATCGAGGTCATCCCGACCGGTTCGACCGCGCTTGACGTCGCGCTCGGCGTCG
GCGGTCTGCCGCGCGGCCGCGTGGTGGAGATCTACGGCCCGGAGTCCTCCGGCAAGACGACTCTGACCCTGCACGCGGTG
GCCAACGCGCAGAAGGCGGGCGGCCAGGTCGCCTTCGTCGACGCGGAGCACGCCCTCGACCCCGAGTACGCCAAGAAGCT
CGGCGTCGACATCGACAATCTGATCCTGTCCCAGCCCGACAACGGCGAGCAGGCGCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTGGACCTGATCGTCATCGACTCCGTGGCTGCCCTGGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGC
GACTCGCACGTGGGTCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGGAAGATCACCAGCGCGCTGAACCAGTCGAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGTTCCCCGGAGACCACGACCGGTGGCCGTG
CGCTGAAGTTCTACGCCTCCGTGCGCATCGACATCCGCCGTATCGAGACCCTCAAGGACGGCACCGAGGCGGTCGGCAAC
CGCACCCGCTGCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTCTACGGTCAGGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGAGCCTGGTACACCTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGACCTCGCGAACGAGATCGAG
AAGAAGATCAAGGAGAAGCTGGGCGTCGGCGTCATGCCGGACGCGTCGGATGCCGAGCATGGCGCGGACGCCGCCGGCGC
GACCACCTCCGCCGAGAACGCGGCGAAGCCGGCGCCCGCGTCCGCCGCCAAGGCCAAGACGGCCAAGTCGGCGGCGGCCA
AGGGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

68.098

86.933

0.592
  recA Neisseria gonorrhoeae strain FA1090

68.098

86.933

0.592
  recA Ralstonia pseudosolanacearum GMI1000

68.21

86.4

0.589
  recA Pseudomonas stutzeri DSM 10701

68

86.667

0.589
  recA Staphylococcus aureus strain ATCC 12600

66.564

86.933

0.579
  recA Acinetobacter baylyi ADP1

66.873

86.133

0.576
  recA Acinetobacter baumannii D1279779

66.873

86.133

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

86.933

0.573
  recA Acinetobacter nosocomialis M2

66.563

86.133

0.573
  recA Vibrio cholerae strain A1552

66.254

86.133

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

86.133

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

63.473

89.067

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.834

90.133

0.557
  recA Helicobacter pylori strain NCTC11637

62.651

88.533

0.555
  recA Helicobacter pylori 26695

62.651

88.533

0.555
  recA Streptococcus pyogenes NZ131

62.538

88.267

0.552
  recA Streptococcus mutans UA159

62.236

88.267

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.614

87.733

0.549
  recA Streptococcus thermophilus LMG 18311

61.446

88.533

0.544
  recA Streptococcus thermophilus LMD-9

61.446

88.533

0.544
  recA Streptococcus mitis SK321

61.145

88.533

0.541
  recA Streptococcus mitis NCTC 12261

61.145

88.533

0.541
  recA Streptococcus pneumoniae TIGR4

61.329

88.267

0.541
  recA Streptococcus pneumoniae R36A

61.329

88.267

0.541
  recA Streptococcus pneumoniae Rx1

61.329

88.267

0.541
  recA Streptococcus pneumoniae D39

61.329

88.267

0.541
  recA Streptococcus pneumoniae R6

61.329

88.267

0.541
  recA Glaesserella parasuis strain SC1401

62.733

85.867

0.539
  recA Lactococcus lactis subsp. cremoris KW2

61.027

88.267

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.062

85.333

0.504