Detailed information NTG0830008

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QLF99_RS13620
• Genome accession: NZ_CP125110
• Coordinates: 2937652..2939019 (+)
• Length: 455 a.a.
• NCBI ID: WP_054667220.1
• Uniprot ID: A0A0S1B260
• Organism: Stenotrophomonas acidaminiphila strain SPDF1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2932652..2944019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLF99_RS13600 (QLF99_13600)	-	2932882..2933565 (+)	684	WP_054667215.1	DUF3108 domain-containing protein	-
QLF99_RS13605 (QLF99_13605)	sucD	2933642..2934517 (-)	876	WP_054667217.1	succinate--CoA ligase subunit alpha	-
QLF99_RS13610 (QLF99_13610)	sucC	2934542..2935714 (-)	1173	WP_054667218.1	ADP-forming succinate--CoA ligase subunit beta	-
QLF99_RS13615 (QLF99_13615)	-	2935975..2937588 (+)	1614	WP_182212766.1	ATP-binding protein	-
QLF99_RS13620 (QLF99_13620)	pilR	2937652..2939019 (+)	1368	WP_054667220.1	sigma-54 dependent transcriptional regulator	Regulator
QLF99_RS13625 (QLF99_13625)	-	2939197..2941125 (-)	1929	WP_282883586.1	sensor histidine kinase	-
QLF99_RS13630 (QLF99_13630)	-	2941128..2943353 (-)	2226	WP_282883587.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49030.14 Da
• Isoelectric Point: 6.2561

>NTDB_id=830008 QLF99_RS13620 WP_054667220.1 2937652..2939019(+) (pilR) [Stenotrophomonas acidaminiphila strain SPDF1]
MNVTHSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLGSNSFDLCLTDMRLPDGNGIELVTEIARDHPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGMVKHALELNNSERVAQPAAPESASRLLGESQAMSDLRSTIAKVARS
QAPVYIVGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGSATEVPVDVRILSATHKDLAVLVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LAAAILSRLARSQQLPTPLLSPSALDALGGYAFPGNVRELENVLERALALADGDSIGASDLRLPTPRGDAGSASEEAPAD
IDAGNAALPSYIEQMERAAIQKALEENRWNRTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1368 bp

>NTDB_id=830008 QLF99_RS13620 WP_054667220.1 2937652..2939019(+) (pilR) [Stenotrophomonas acidaminiphila strain SPDF1]
ATGAACGTGACGCATAGCGCGCTGGTCGTCGACGACGAACGGGACATCCGCGAACTCCTGGTCCTCACCCTCGGCAGGAT
GGGACTGCGCATCAGTACCGCCGCCAATCTGGCCGAAGCCCGCGAACTGCTGGGCAGCAACAGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCACGCGACCATCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCACTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGCGGCATGGTCAAGCACGCGCTGGAGCTCAACAACAGCGAGCGCGTGGCGCAGCCCGCCGCAC
CGGAAAGCGCCTCGCGCCTGCTCGGCGAATCGCAGGCGATGTCCGACCTGCGCAGCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGACCAGGGCGCGCG
CGCGGCCGGGCCGTTCATCCCGGTCAACTGCGGCGCCATCCCGGGCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCGCACGCGGACAAGCCGGGACTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTCGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCTCGGC
CACCGAGGTACCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCGGTGCTGGTGCAGGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTCCCCCCGCTGCGCGAGCGGCGCGGCGACCTGCCGCAG
CTGGCCGCGGCCATCCTCAGCCGGCTGGCGCGCTCGCAGCAGCTGCCCACGCCGCTGTTGTCGCCCTCGGCACTGGATGC
CCTGGGCGGTTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACGTACTGGAACGCGCGCTCGCCCTGGCCGATGGCG
ACAGCATCGGCGCCAGCGACCTGCGCCTGCCGACCCCGCGCGGCGATGCCGGCAGCGCGAGCGAAGAAGCTCCGGCCGAC
ATCGATGCCGGCAATGCCGCCCTTCCCTCGTACATCGAACAGATGGAACGCGCGGCCATCCAGAAGGCGCTGGAAGAAAA
CCGCTGGAACCGGACCCGCACCGCCGCGCAGTTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTCAAGAAGCTGGGCA
TGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (412-452)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: A0A0S1B260

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.302	99.121	0.637
pilR	Acinetobacter baumannii strain A118	48.913	100	0.495