Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SJH97_RS25065 Genome accession   NZ_CP139175
Coordinates   5398274..5399389 (+) Length   371 a.a.
NCBI ID   WP_320586953.1    Uniprot ID   -
Organism   Streptomyces sp. CL7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5393274..5404389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJH97_RS25035 (SJH97_25035) - 5393387..5394331 (+) 945 WP_320586948.1 AraC family transcriptional regulator -
  SJH97_RS25040 (SJH97_25040) - 5394292..5395029 (+) 738 WP_320588468.1 AzlC family ABC transporter permease -
  SJH97_RS25045 (SJH97_25045) - 5395026..5395334 (+) 309 WP_320586949.1 AzlD domain-containing protein -
  SJH97_RS25050 (SJH97_25050) - 5395373..5396356 (-) 984 WP_320586950.1 hypothetical protein -
  SJH97_RS25055 (SJH97_25055) - 5396436..5396630 (+) 195 WP_320586951.1 DUF3046 domain-containing protein -
  SJH97_RS25060 (SJH97_25060) - 5396689..5398032 (+) 1344 WP_320586952.1 AI-2E family transporter -
  SJH97_RS25065 (SJH97_25065) recA 5398274..5399389 (+) 1116 WP_320586953.1 recombinase RecA Machinery gene
  SJH97_RS25070 (SJH97_25070) recX 5399393..5400202 (+) 810 WP_093765187.1 recombination regulator RecX -
  SJH97_RS25075 (SJH97_25075) - 5400244..5400924 (-) 681 WP_320586954.1 class F sortase -
  SJH97_RS25080 (SJH97_25080) - 5400930..5401769 (-) 840 WP_320586955.1 DUF4397 domain-containing protein -
  SJH97_RS25085 (SJH97_25085) - 5401979..5402317 (-) 339 WP_320586956.1 helix-turn-helix transcriptional regulator -
  SJH97_RS25090 (SJH97_25090) - 5402593..5403657 (+) 1065 WP_320586957.1 TerC family protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39310.79 Da        Isoelectric Point: 6.5216

>NTDB_id=829566 SJH97_RS25065 WP_320586953.1 5398274..5399389(+) (recA) [Streptomyces sp. CL7]
MAGTDREKALDAALAQIERQFGKGAVMRMGERSKEPIEVIPTGSTALDVALGVGGLPRGRVVEIYGPESSGKTTLTLHAV
ANAQRAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTEAVGN
RTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILTKLGVGVRSEETPAEAGADAAAAPAEPAAVPAPAAKGTKSKAAAAKS

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=829566 SJH97_RS25065 WP_320586953.1 5398274..5399389(+) (recA) [Streptomyces sp. CL7]
ATGGCAGGAACCGACCGCGAGAAGGCGCTCGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCGGTCAT
GCGCATGGGCGAGCGGTCGAAGGAGCCCATCGAGGTCATCCCGACCGGGTCGACCGCGCTCGACGTGGCCCTCGGCGTCG
GCGGCCTGCCGCGCGGCCGTGTGGTGGAGATCTACGGACCGGAGTCCTCCGGTAAGACGACCCTGACCCTGCACGCGGTG
GCGAACGCGCAGAGGGCCGGCGGCCAGGTCGCGTTCGTGGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGC
GACAGCCACGTGGGTCTGCAGGCCCGTCTGATGAGCCAGGCCCTGCGGAAGATCACCAGCGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACGACCGGTGGCCGCG
CGCTGAAGTTCTACGCCTCCGTGCGTATCGACATCCGCCGCATCGAGACCCTCAAGGACGGCACCGAGGCGGTCGGCAAC
CGCACCCGCTGCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGTCTGATCGACATGGGCGTGGAGCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTGAAGGACAACCCCGACCTCGCCAACGAGATCGAG
AAGAAGATCCTCACGAAGCTGGGCGTGGGCGTCCGGTCCGAGGAGACCCCCGCCGAGGCGGGCGCGGACGCCGCCGCCGC
TCCGGCCGAGCCCGCGGCGGTACCGGCCCCGGCGGCCAAGGGCACCAAGTCCAAGGCCGCGGCGGCCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.959

92.183

0.617
  recA Vibrio cholerae strain A1552

63.248

94.609

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.248

94.609

0.598
  recA Neisseria gonorrhoeae MS11

67.791

87.871

0.596
  recA Neisseria gonorrhoeae strain FA1090

67.791

87.871

0.596
  recA Acinetobacter baumannii D1279779

64.118

91.644

0.588
  recA Ralstonia pseudosolanacearum GMI1000

69.01

84.367

0.582
  recA Staphylococcus aureus strain ATCC 12600

66.258

87.871

0.582
  recA Acinetobacter baylyi ADP1

65.951

87.871

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

65.644

87.871

0.577
  recA Acinetobacter nosocomialis M2

65.944

87.062

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

63.284

90.296

0.571
  recA Streptococcus pyogenes NZ131

60.458

94.07

0.569
  recA Streptococcus mitis NCTC 12261

59.885

94.07

0.563
  recA Streptococcus mitis SK321

59.599

94.07

0.561
  recA Streptococcus pneumoniae D39

58.146

95.957

0.558
  recA Streptococcus pneumoniae TIGR4

58.146

95.957

0.558
  recA Streptococcus pneumoniae R36A

58.146

95.957

0.558
  recA Streptococcus pneumoniae Rx1

58.146

95.957

0.558
  recA Streptococcus pneumoniae R6

58.146

95.957

0.558
  recA Streptococcus mutans UA159

61.934

89.218

0.553
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

87.871

0.553
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

88.679

0.55
  recA Helicobacter pylori strain NCTC11637

62.462

87.601

0.547
  recA Helicobacter pylori 26695

62.462

87.601

0.547
  recA Streptococcus thermophilus LMG 18311

61.145

89.488

0.547
  recA Streptococcus thermophilus LMD-9

61.145

89.488

0.547
  recA Glaesserella parasuis strain SC1401

62.422

86.792

0.542
  recA Lactococcus lactis subsp. cremoris KW2

61.538

87.601

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

88.14

0.509