Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P8730_RS07005 Genome accession   NZ_CP138577
Coordinates   1495702..1496748 (+) Length   348 a.a.
NCBI ID   WP_019395734.1    Uniprot ID   A0A396S502
Organism   Pseudomonas aeruginosa strain strain KUD2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1490702..1501748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8730_RS06990 (P8730_06990) - 1493285..1494292 (-) 1008 WP_003098486.1 TolB family protein -
  P8730_RS06995 (P8730_06995) - 1494440..1494946 (+) 507 WP_003129950.1 CinA family protein -
  P8730_RS07000 (P8730_07000) - 1495080..1495598 (+) 519 Protein_1388 ATPase domain-containing protein -
  P8730_RS07005 (P8730_07005) recA 1495702..1496748 (+) 1047 WP_019395734.1 recombinase RecA Machinery gene
  P8730_RS07010 (P8730_07010) - 1496802..1496941 (-) 140 Protein_1390 IS5/IS1182 family transposase -
  P8730_RS07015 (P8730_07015) - 1497118..1497714 (+) 597 Protein_1391 IS1182 family transposase -
  P8730_RS07020 (P8730_07020) - 1498098..1498556 (+) 459 Protein_1392 transposase -
  P8730_RS07025 (P8730_07025) - 1499041..1501464 (+) 2424 WP_224429309.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37460.01 Da        Isoelectric Point: 5.3286

>NTDB_id=826882 P8730_RS07005 WP_019395734.1 1495702..1496748(+) (recA) [Pseudomonas aeruginosa strain strain KUD2]
MDQAKSKALEAALSQIEKQFGKGSIMRLGSDRTMDIDVISTGSLGLDIALGVGGLPRGRIVEIYGPESSGKTTLTLSVIA
EAQRQGLTCAFVDAEHALDPIYAAKLGVNIDELLCSQPDTGEQALEIVDILTRSGAVNLIVVDSVAALVPKAEIEGEIGD
SHVGLAARMMSQAMRKITGNLKNSNTMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGEEVVGSE
TRVKVVKNKVAAPFRQAEFQIVYGQGISKAGEIVDLAVANNFVEKSGAWYSFEGNKIGQGKANTMKWLLENKPTMDKLEG
MIREKLMSKPQAETSARLATQEELADDY

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=826882 P8730_RS07005 WP_019395734.1 1495702..1496748(+) (recA) [Pseudomonas aeruginosa strain strain KUD2]
ATGGATCAGGCAAAAAGCAAAGCGTTAGAAGCGGCTCTTTCTCAAATTGAGAAGCAGTTTGGTAAGGGTTCCATCATGCG
GCTGGGCTCCGACCGCACTATGGATATAGATGTTATATCGACTGGCTCACTCGGCTTGGACATCGCCTTGGGGGTGGGTG
GGTTGCCGCGCGGCCGTATCGTTGAAATCTATGGGCCGGAGTCTTCTGGTAAAACCACGCTTACGCTGTCGGTGATTGCT
GAAGCGCAGCGTCAAGGTTTGACTTGTGCATTTGTCGATGCTGAGCACGCGCTTGATCCGATCTACGCAGCCAAGCTCGG
CGTTAATATTGACGAACTCCTGTGCTCACAGCCTGACACTGGTGAGCAGGCACTTGAAATCGTAGACATCTTGACGCGTT
CTGGGGCAGTCAATCTTATTGTCGTTGACTCTGTTGCTGCTCTTGTTCCGAAGGCTGAGATTGAAGGCGAAATCGGGGAT
TCCCATGTAGGTCTTGCCGCCCGAATGATGTCGCAGGCGATGAGGAAGATCACTGGTAACCTGAAGAACTCCAATACTAT
GTGTATCTTCATTAACCAGATTCGTATGAAGATCGGTGTAATGTTTGGCAACCCGGAAACCACCACCGGCGGTAACGCCC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGTACCGGCGCGGTCAAGGAAGGCGAGGAAGTGGTGGGCAGCGAA
ACCCGTGTGAAAGTGGTCAAGAACAAAGTTGCTGCTCCATTCAGGCAAGCAGAGTTCCAGATCGTTTACGGTCAGGGTAT
TAGCAAGGCGGGTGAGATCGTTGACCTCGCTGTTGCTAACAACTTTGTTGAAAAGTCAGGCGCTTGGTACTCCTTCGAAG
GTAACAAGATCGGCCAAGGTAAGGCCAATACCATGAAATGGCTGTTGGAAAACAAACCTACTATGGACAAGCTGGAAGGT
ATGATTCGCGAAAAGTTGATGTCTAAGCCTCAGGCTGAAACCTCTGCACGTCTCGCAACCCAAGAAGAACTGGCTGACGA
CTATTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A396S502

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.775

99.713

0.736
  recA Vibrio cholerae strain A1552

73.775

99.713

0.736
  recA Pseudomonas stutzeri DSM 10701

73.699

99.425

0.733
  recA Acinetobacter baylyi ADP1

70.554

98.563

0.695
  recA Glaesserella parasuis strain SC1401

68.895

98.851

0.681
  recA Acinetobacter nosocomialis M2

71.646

94.253

0.675
  recA Acinetobacter baumannii D1279779

71.037

94.253

0.67
  recA Neisseria gonorrhoeae strain FA1090

69.753

93.103

0.649
  recA Neisseria gonorrhoeae MS11

69.753

93.103

0.649
  recA Ralstonia pseudosolanacearum GMI1000

69.206

90.517

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.69

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

64.375

91.954

0.592
  recA Helicobacter pylori strain NCTC11637

61.702

94.54

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

93.966

0.58
  recA Helicobacter pylori 26695

61.398

94.54

0.58
  recA Staphylococcus aureus strain ATCC 12600

61.35

93.678

0.575
  recA Streptococcus pyogenes NZ131

57.349

99.713

0.572
  recA Streptococcus pneumoniae R36A

61.043

93.678

0.572
  recA Streptococcus pneumoniae D39

61.043

93.678

0.572
  recA Streptococcus pneumoniae R6

61.043

93.678

0.572
  recA Streptococcus pneumoniae TIGR4

61.043

93.678

0.572
  recA Streptococcus pneumoniae Rx1

61.043

93.678

0.572
  recA Streptococcus mitis NCTC 12261

60.991

92.816

0.566
  recA Streptococcus mutans UA159

56.772

99.713

0.566
  recA Streptococcus mitis SK321

60.681

92.816

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.574

94.54

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

59.875

91.667

0.549
  recA Streptococcus thermophilus LMD-9

59.133

92.816

0.549
  recA Streptococcus thermophilus LMG 18311

59.133

92.816

0.549
  recA Lactococcus lactis subsp. cremoris KW2

58.204

92.816

0.54