Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QJV49_RS03970 Genome accession   NZ_CP124538
Coordinates   826547..826714 (-) Length   55 a.a.
NCBI ID   WP_228766058.1    Uniprot ID   -
Organism   Lactococcus sp. NH2-7C     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 821547..831714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS03945 (QJV49_03945) atpF 821619..822125 (-) 507 WP_010906128.1 F0F1 ATP synthase subunit B -
  QJV49_RS03950 (QJV49_03950) atpB 822140..822853 (-) 714 WP_225511921.1 F0F1 ATP synthase subunit A -
  QJV49_RS03955 (QJV49_03955) - 822898..823113 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  QJV49_RS03960 (QJV49_03960) - 823297..824073 (-) 777 WP_225511920.1 alpha/beta hydrolase family protein -
  QJV49_RS03965 (QJV49_03965) comEC 824356..826566 (-) 2211 WP_225511919.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QJV49_RS03970 (QJV49_03970) comEA 826547..826714 (-) 168 WP_228766058.1 helix-hairpin-helix domain-containing protein Machinery gene
  QJV49_RS03975 (QJV49_03975) - 826764..826886 (+) 123 WP_255597690.1 hypothetical protein -
  QJV49_RS03980 (QJV49_03980) comEA 826883..827194 (-) 312 WP_225511918.1 SLBB domain-containing protein Machinery gene
  QJV49_RS03985 (QJV49_03985) - 827254..828615 (-) 1362 WP_225511917.1 ABC transporter permease -
  QJV49_RS03990 (QJV49_03990) - 828612..829544 (-) 933 WP_225511916.1 ABC transporter ATP-binding protein -
  QJV49_RS03995 (QJV49_03995) - 829648..830046 (-) 399 WP_225511915.1 hypothetical protein -
  QJV49_RS04000 (QJV49_04000) - 830149..830713 (-) 565 Protein_795 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 55 a.a.        Molecular weight: 6194.08 Da        Isoelectric Point: 5.0165

>NTDB_id=826319 QJV49_RS03970 WP_228766058.1 826547..826714(-) (comEA) [Lactococcus sp. NH2-7C]
MTELQKLTGVGQKKAQDIIDFRTKNGDFKSLEDLGKVSGFGDKTLEKLKDELCFE

Nucleotide


Download         Length: 168 bp        

>NTDB_id=826319 QJV49_RS03970 WP_228766058.1 826547..826714(-) (comEA) [Lactococcus sp. NH2-7C]
GTGACAGAATTACAAAAATTAACAGGTGTTGGTCAGAAAAAAGCTCAGGACATCATCGATTTTCGGACGAAAAATGGTGA
TTTCAAATCACTTGAAGACTTGGGAAAAGTTTCTGGTTTTGGAGATAAAACACTAGAAAAATTGAAAGATGAGCTATGTT
TTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(2-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

85.455

100

0.855
  comEA/celA/cilE Streptococcus mitis SK321

54.545

100

0.545
  comEA/celA/cilE Streptococcus mitis NCTC 12261

54.545

100

0.545
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

54.545

100

0.545
  comEA/celA/cilE Streptococcus pneumoniae Rx1

54.545

100

0.545
  comEA/celA/cilE Streptococcus pneumoniae D39

54.545

100

0.545
  comEA/celA/cilE Streptococcus pneumoniae R6

54.545

100

0.545
  comEA/comE1 Glaesserella parasuis strain SC1401

50.909

100

0.509
  comEA Latilactobacillus sakei subsp. sakei 23K

51.923

94.545

0.491
  comE1/comEA Haemophilus influenzae Rd KW20

48.148

98.182

0.473
  comEA Acinetobacter baylyi ADP1

50.98

92.727

0.473
  comEA Bacillus subtilis subsp. subtilis str. 168

48.077

94.545

0.455
  comE Neisseria gonorrhoeae MS11

51.02

89.091

0.455
  comE Neisseria gonorrhoeae MS11

51.02

89.091

0.455
  comE Neisseria gonorrhoeae MS11

51.02

89.091

0.455
  comE Neisseria gonorrhoeae MS11

51.02

89.091

0.455
  comEA Staphylococcus aureus N315

48.98

89.091

0.436
  comEA Staphylococcus aureus MW2

48.98

89.091

0.436
  comEA Streptococcus thermophilus LMD-9

48

90.909

0.436
  comEA Acinetobacter baumannii strain A118

45.283

96.364

0.436
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

43.636

100

0.436
  comEA Acinetobacter baumannii D1279779

43.396

96.364

0.418
  comEA Legionella pneumophila str. Paris

47.826

83.636

0.4
  comEA Legionella pneumophila strain ERS1305867

47.826

83.636

0.4
  comEA Vibrio parahaemolyticus RIMD 2210633

45.833

87.273

0.4
  comEA Vibrio campbellii strain DS40M4

45.833

87.273

0.4
  comA Synechocystis sp. PCC 6803

40.385

94.545

0.382
  comEA Thermus thermophilus HB27

38.462

94.545

0.364