Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QJV49_RS03980 Genome accession   NZ_CP124538
Coordinates   826883..827194 (-) Length   103 a.a.
NCBI ID   WP_225511918.1    Uniprot ID   A0AA49EXM3
Organism   Lactococcus sp. NH2-7C     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 821883..832194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS03950 (QJV49_03950) atpB 822140..822853 (-) 714 WP_225511921.1 F0F1 ATP synthase subunit A -
  QJV49_RS03955 (QJV49_03955) - 822898..823113 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  QJV49_RS03960 (QJV49_03960) - 823297..824073 (-) 777 WP_225511920.1 alpha/beta hydrolase family protein -
  QJV49_RS03965 (QJV49_03965) comEC 824356..826566 (-) 2211 WP_225511919.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QJV49_RS03970 (QJV49_03970) comEA 826547..826714 (-) 168 WP_228766058.1 helix-hairpin-helix domain-containing protein Machinery gene
  QJV49_RS03975 (QJV49_03975) - 826764..826886 (+) 123 WP_255597690.1 hypothetical protein -
  QJV49_RS03980 (QJV49_03980) comEA 826883..827194 (-) 312 WP_225511918.1 SLBB domain-containing protein Machinery gene
  QJV49_RS03985 (QJV49_03985) - 827254..828615 (-) 1362 WP_225511917.1 ABC transporter permease -
  QJV49_RS03990 (QJV49_03990) - 828612..829544 (-) 933 WP_225511916.1 ABC transporter ATP-binding protein -
  QJV49_RS03995 (QJV49_03995) - 829648..830046 (-) 399 WP_225511915.1 hypothetical protein -
  QJV49_RS04000 (QJV49_04000) - 830149..830713 (-) 565 Protein_795 GNAT family N-acetyltransferase -
  QJV49_RS04005 (QJV49_04005) - 830886..832064 (-) 1179 WP_225511914.1 SLC13 family permease -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11266.13 Da        Isoelectric Point: 8.8966

>NTDB_id=826320 QJV49_RS03980 WP_225511918.1 826883..827194(-) (comEA) [Lactococcus sp. NH2-7C]
MDKILEKVKEYWKMIILVVCGLIAGGIFYVLTNGQKPTTNLSVENLSPVSSQKSVSKFSGPNEKSVSKIMVDLKGAVTKP
NVYQISSDERLVDLIKEAGGFTD

Nucleotide


Download         Length: 312 bp        

>NTDB_id=826320 QJV49_RS03980 WP_225511918.1 826883..827194(-) (comEA) [Lactococcus sp. NH2-7C]
ATGGATAAGATTTTAGAAAAAGTAAAAGAATATTGGAAAATGATTATTTTAGTTGTTTGTGGACTCATTGCTGGTGGAAT
TTTTTACGTTTTAACCAACGGTCAAAAGCCAACTACAAATCTGTCAGTAGAAAATTTAAGTCCCGTCAGCAGCCAAAAGT
CTGTCAGTAAATTTAGTGGACCTAATGAAAAATCTGTCAGTAAAATTATGGTTGATTTAAAAGGTGCGGTGACAAAACCT
AATGTCTATCAAATTTCGTCAGATGAACGTTTAGTTGATTTAATTAAAGAAGCCGGTGGTTTTACTGACTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(70-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Lactococcus lactis subsp. cremoris KW2

65.385

100

0.66
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

36.036

100

0.388
  comEA/celA/cilE Streptococcus mitis SK321

35.78

100

0.379
  comEA/celA/cilE Streptococcus pneumoniae Rx1

34.234

100

0.369
  comEA/celA/cilE Streptococcus pneumoniae D39

34.234

100

0.369
  comEA/celA/cilE Streptococcus pneumoniae R6

34.234

100

0.369