Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R3F78_RS21305 Genome accession   NZ_CP138301
Coordinates   3970568..3971656 (+) Length   362 a.a.
NCBI ID   WP_014494106.1    Uniprot ID   A0ABY3QE95
Organism   Bradyrhizobium japonicum strain CNPSo 29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3965568..3976656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3F78_RS21285 (R3F78_21275) - 3966268..3967281 (-) 1014 WP_039152143.1 glycosyltransferase family 2 protein -
  R3F78_RS21290 (R3F78_21280) - 3968129..3968362 (-) 234 WP_080703957.1 hypothetical protein -
  R3F78_RS21295 (R3F78_21285) - 3968888..3969055 (-) 168 WP_085973079.1 hypothetical protein -
  R3F78_RS21300 (R3F78_21290) - 3969752..3969967 (-) 216 WP_038956078.1 hypothetical protein -
  R3F78_RS21305 (R3F78_21295) recA 3970568..3971656 (+) 1089 WP_014494106.1 recombinase RecA Machinery gene
  R3F78_RS21310 (R3F78_21300) - 3971752..3972744 (+) 993 WP_080703956.1 hypothetical protein -
  R3F78_RS21315 (R3F78_21305) gcvP 3972897..3975779 (-) 2883 WP_039157441.1 aminomethyl-transferring glycine dehydrogenase -
  R3F78_RS21320 (R3F78_21310) gcvH 3975797..3976165 (-) 369 WP_028158405.1 glycine cleavage system protein GcvH -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38622.27 Da        Isoelectric Point: 5.3566

>NTDB_id=824381 R3F78_RS21305 WP_014494106.1 3970568..3971656(+) (recA) [Bradyrhizobium japonicum strain CNPSo 29]
MSNTALRIVEGSSMDKSKALAAALSQIERQFGKGSVMKLGKNDRSMDVEAVSSGSLGLDIALGIGGLPKGRVVEIYGPES
SGKTTLALHTVAEAQKKGGICAFIDAEHALDPVYARKLGVNIDELLISQPDTGEQALEICDTLVRSGAVDVLVVDSVAAL
VPKAELEGEMGDALPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGNALKFYASVRLDIRRIG
AIKERDEVVGNTTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGIVEKSGAWFSYDSQRLGQGRENSKAFL
KANPDITAKIETSIRQNSGLIAEQILAGTPERDADGEEPADE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=824381 R3F78_RS21305 WP_014494106.1 3970568..3971656(+) (recA) [Bradyrhizobium japonicum strain CNPSo 29]
ATGTCCAACACTGCCCTGCGTATCGTCGAAGGATCCTCCATGGACAAGAGTAAAGCTCTGGCCGCCGCGCTCTCCCAGAT
CGAGCGCCAGTTCGGCAAGGGCTCGGTGATGAAGCTCGGCAAGAACGACCGGTCGATGGATGTCGAGGCAGTGTCCTCGG
GCTCCCTCGGGCTCGACATTGCGCTCGGGATCGGTGGTCTGCCGAAGGGACGCGTCGTGGAAATCTACGGGCCGGAATCC
TCGGGCAAGACCACGCTGGCGCTGCACACGGTGGCGGAAGCGCAGAAGAAGGGCGGAATCTGCGCCTTCATCGACGCCGA
GCACGCGCTCGACCCGGTCTATGCGCGCAAGCTGGGCGTCAACATCGACGAGCTCCTGATTTCGCAGCCGGACACGGGCG
AGCAGGCGCTGGAAATCTGCGACACGCTGGTGCGCTCGGGTGCGGTGGACGTGCTGGTGGTCGATTCGGTCGCGGCGCTG
GTGCCGAAGGCCGAGCTCGAGGGCGAGATGGGCGATGCGCTGCCGGGTCTCCAGGCCCGTCTGATGAGCCAGGCGCTGCG
CAAGCTGACGGCCTCCATCAACAAATCCAACACCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGT
ACGGCTCGCCGGAAACCACGACCGGCGGCAACGCGCTGAAATTCTATGCCTCCGTCCGTCTCGACATCCGCCGCATCGGC
GCGATCAAGGAGCGCGATGAAGTGGTCGGCAACACCACGCGCGTCAAGGTGGTGAAGAACAAGCTGGCGCCGCCCTTCAA
GCAGGTCGAATTCGACATCATGTACGGCGAGGGCGTCTCCAAGATGGGCGAGATCCTCGATCTCGGCGTCAAGGCCGGCA
TCGTCGAAAAGTCCGGTGCCTGGTTCTCCTATGACAGCCAGCGCCTCGGCCAGGGCCGCGAGAATTCGAAGGCGTTTTTG
AAGGCCAACCCCGACATCACCGCCAAGATCGAGACCTCGATCCGCCAGAACTCCGGCCTGATCGCCGAGCAGATTTTGGC
CGGCACGCCCGAGCGCGACGCCGACGGCGAGGAGCCGGCGGACGAGTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

65.928

99.724

0.657
  recA Neisseria gonorrhoeae strain FA1090

67.049

96.409

0.646
  recA Neisseria gonorrhoeae MS11

67.049

96.409

0.646
  recA Vibrio cholerae strain A1552

69.851

92.541

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.851

92.541

0.646
  recA Acinetobacter baylyi ADP1

66.954

96.133

0.644
  recA Acinetobacter nosocomialis M2

66.476

96.409

0.641
  recA Pseudomonas stutzeri DSM 10701

71.651

88.674

0.635
  recA Ralstonia pseudosolanacearum GMI1000

72.611

86.74

0.63
  recA Acinetobacter baumannii D1279779

69.876

88.95

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.873

95.58

0.61
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

90.055

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.055

90.331

0.597
  recA Helicobacter pylori strain NCTC11637

65.35

90.884

0.594
  recA Helicobacter pylori 26695

64.742

90.884

0.588
  recA Streptococcus mitis SK321

60.114

96.961

0.583
  recA Streptococcus mutans UA159

59.375

97.238

0.577
  recA Streptococcus thermophilus LMG 18311

58.592

98.066

0.575
  recA Staphylococcus aureus strain ATCC 12600

63.497

90.055

0.572
  recA Streptococcus mitis NCTC 12261

62.236

91.436

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

60.767

93.646

0.569
  recA Streptococcus pneumoniae R36A

61.631

91.436

0.564
  recA Streptococcus pneumoniae Rx1

61.631

91.436

0.564
  recA Streptococcus pneumoniae D39

61.631

91.436

0.564
  recA Streptococcus pneumoniae R6

61.631

91.436

0.564
  recA Streptococcus pneumoniae TIGR4

61.631

91.436

0.564
  recA Streptococcus thermophilus LMD-9

61.631

91.436

0.564
  recA Lactococcus lactis subsp. cremoris KW2

61.329

91.436

0.561
  recA Streptococcus pyogenes NZ131

60.79

90.884

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.305

88.674

0.552