Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R2B38_RS31345 Genome accession   NZ_CP137549
Coordinates   6938769..6939902 (+) Length   377 a.a.
NCBI ID   WP_318019210.1    Uniprot ID   -
Organism   Streptomyces sp. N50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6933769..6944902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B38_RS31315 (R2B38_31315) - 6933781..6933975 (+) 195 WP_033286172.1 DUF3046 domain-containing protein -
  R2B38_RS31320 (R2B38_31320) - 6934057..6935481 (+) 1425 WP_411978512.1 AI-2E family transporter -
  R2B38_RS31325 (R2B38_31325) - 6935516..6936262 (-) 747 WP_318019206.1 hypothetical protein -
  R2B38_RS31330 (R2B38_31330) - 6936442..6937053 (+) 612 WP_318019207.1 dihydrofolate reductase family protein -
  R2B38_RS31335 (R2B38_31335) - 6937106..6937318 (-) 213 WP_318019208.1 hypothetical protein -
  R2B38_RS31340 (R2B38_31340) - 6937640..6938212 (-) 573 WP_318019209.1 DUF4232 domain-containing protein -
  R2B38_RS31345 (R2B38_31345) recA 6938769..6939902 (+) 1134 WP_318019210.1 recombinase RecA Machinery gene
  R2B38_RS31350 (R2B38_31350) recX 6939906..6940880 (+) 975 WP_318019211.1 recombination regulator RecX -
  R2B38_RS31355 (R2B38_31355) - 6941079..6941897 (+) 819 WP_318019212.1 helix-turn-helix domain-containing protein -
  R2B38_RS31360 (R2B38_31360) - 6941894..6944718 (+) 2825 Protein_6190 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 39962.52 Da        Isoelectric Point: 6.3778

>NTDB_id=822287 R2B38_RS31345 WP_318019210.1 6938769..6939902(+) (recA) [Streptomyces sp. N50]
MAGTDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQRAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITGALHQSGTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGHGISREGGLIDMGVENGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGVGVRPEKDKPAAEAVADGVVPTATDDAAKAVPAPAAAKTTKAKATAAKS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=822287 R2B38_RS31345 WP_318019210.1 6938769..6939902(+) (recA) [Streptomyces sp. N50]
ATGGCAGGAACCGACCGCGAGAAGGCGCTGGACGCCGCGCTCGCACAGATTGAACGGCAATTCGGCAAGGGCGCCGTGAT
GCGCCTCGGCGAGCGGCCGAACGAGCCCATCGAGGTCATCCCCACCGGCTCGACCGCGCTCGACGTCGCCCTCGGTGTCG
GCGGCCTGCCGCGCGGCCGAGTGGTGGAGGTCTACGGCCCGGAGTCCTCCGGCAAGACGACCCTGACCCTGCACGCGGTG
GCGAACGCCCAGCGGGCCGGCGGCCAGGTCGCGTTCGTGGACGCGGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTGATCCTGTCCCAGCCGGACAACGGCGAGCAGGCCCTGGAGATCGTGGACATGCTGGTCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCCGTCGCGGCACTCGTCCCGCGCGCGGAGATCGAGGGCGAGATGGGA
GACAGCCACGTCGGTCTCCAGGCCCGCCTGATGAGCCAGGCGCTCCGCAAGATCACAGGCGCGCTCCACCAGTCCGGGAC
CACCGCGATCTTCATCAATCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCCCCGGAGACCACGACCGGTGGCCGTG
CCCTGAAGTTCTACGCCTCGGTGCGACTCGACATCCGCCGTATCGAGACCCTCAAGGACGGCACCGACGCGGTCGGCAAC
CGCACCCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCACGG
CATCAGCCGCGAGGGCGGCCTGATCGACATGGGCGTGGAGAACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAACTCGGCCAGGGCAAGGAGAACGCGCGCAACTTCCTCAAGGACAACCCCGACCTGGCCAACGAGATCGAG
AAGAAGATCCTGGAGAAGCTGGGCGTGGGCGTCCGTCCGGAGAAGGACAAGCCCGCTGCCGAGGCGGTCGCGGACGGGGT
GGTCCCCACCGCCACGGACGACGCCGCGAAGGCGGTGCCCGCTCCGGCCGCGGCCAAGACCACCAAGGCCAAGGCCACGG
CAGCCAAGAGCTGA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.862

90.451

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.248

93.103

0.589
  recA Vibrio cholerae strain A1552

63.248

93.103

0.589
  recA Neisseria gonorrhoeae strain FA1090

68.75

84.881

0.584
  recA Neisseria gonorrhoeae MS11

68.75

84.881

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

86.472

0.578
  recA Staphylococcus aureus strain ATCC 12600

66.871

86.472

0.578
  recA Acinetobacter baumannii D1279779

67.183

85.676

0.576
  recA Acinetobacter baylyi ADP1

67.183

85.676

0.576
  recA Ralstonia pseudosolanacearum GMI1000

69.329

83.024

0.576
  recA Acinetobacter nosocomialis M2

66.873

85.676

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.318

92.573

0.568
  recA Helicobacter pylori 26695

61.471

90.186

0.554
  recA Helicobacter pylori strain NCTC11637

61.471

90.186

0.554
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

86.472

0.552
  recA Streptococcus thermophilus LMG 18311

58.427

94.43

0.552
  recA Streptococcus pneumoniae Rx1

57.222

95.491

0.546
  recA Streptococcus pneumoniae D39

57.222

95.491

0.546
  recA Streptococcus pneumoniae TIGR4

57.222

95.491

0.546
  recA Streptococcus pneumoniae R6

57.222

95.491

0.546
  recA Streptococcus pneumoniae R36A

57.222

95.491

0.546
  recA Streptococcus pyogenes NZ131

61.818

87.533

0.541
  recA Streptococcus mutans UA159

61.631

87.798

0.541
  recA Glaesserella parasuis strain SC1401

63.043

85.411

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

87.268

0.536
  recA Streptococcus mitis SK321

60.725

87.798

0.533
  recA Streptococcus mitis NCTC 12261

60.725

87.798

0.533
  recA Lactococcus lactis subsp. cremoris KW2

61.846

86.207

0.533
  recA Streptococcus thermophilus LMD-9

61.846

86.207

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

86.737

0.504