Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R5Y34_RS06610 Genome accession   NZ_CP137530
Coordinates   1288504..1289550 (-) Length   348 a.a.
NCBI ID   WP_002216923.1    Uniprot ID   A1KUQ0
Organism   Neisseria meningitidis strain EXNM678     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1283504..1294550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS06595 dnaX 1283840..1285969 (+) 2130 WP_002224439.1 DNA polymerase III subunit gamma/tau -
  R5Y34_RS06600 - 1286049..1286384 (+) 336 WP_002219073.1 YbaB/EbfC family nucleoid-associated protein -
  R5Y34_RS06605 - 1287154..1288119 (+) 966 WP_002216744.1 IS30-like element IS1655 family transposase -
  R5Y34_RS06610 recA 1288504..1289550 (-) 1047 WP_002216923.1 recombinase RecA Machinery gene
  R5Y34_RS06615 aroD 1289804..1290568 (+) 765 WP_002224578.1 type I 3-dehydroquinate dehydratase -
  R5Y34_RS06620 rep 1290588..1292603 (+) 2016 WP_101174622.1 DNA helicase Rep -
  R5Y34_RS06625 dinB 1292856..1293914 (-) 1059 WP_002221144.1 DNA polymerase IV -
  R5Y34_RS06630 - 1294058..1294465 (-) 408 Protein_1295 fe(3+)-pyochelin receptor -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37640.89 Da        Isoelectric Point: 4.8330

>NTDB_id=822119 R5Y34_RS06610 WP_002216923.1 1288504..1289550(-) (recA) [Neisseria meningitidis strain EXNM678]
MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAV
AQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGN
ETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEIADEID
AKIRALNGIEMHITEGTQDETDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=822119 R5Y34_RS06610 WP_002216923.1 1288504..1289550(-) (recA) [Neisseria meningitidis strain EXNM678]
ATGTCAGACGACAAAAGCAAAGCACTTGCCGCCGCACTGGCGCAAATCGAAAAAAGTTTCGGCAAAGGCGCCATCATGAA
AATGGACGGCAGCCAGCAGGAAGAAAACCTCGAAGTCATTTCCACCGGATCGCTCGGATTAGACCTCGCCCTCGGAGTCG
GCGGTCTGCCGCGCGGGCGCATCGTCGAAATCTTCGGCCCAGAATCCTCCGGCAAAACCACCCTCTGCCTCGAAGCCGTC
GCCCAATGCCAGAAAAACGGCGGCGTGTGCGCCTTTGTCGATGCCGAACACGCCTTCGATCCCGTTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAGCTTTACCTGTCCCAGCCCGATACCGGCGAACAGGCTTTGGAAATCTGCGACACACTCGTCC
GTTCGGGCGGCATAGATATGGTAGTCGTCGATTCCGTAGCCGCACTCGTCCCCAAAGCCGAAATCGAAGGCGATATGGGG
GACAGCCATGTCGGACTGCAGGCGCGCCTGATGAGCCAGGCTTTGCGCAAACTGACCGGACACATCAAAAAAACCAACAC
GCTGGTTGTGTTCATCAACCAAATCCGGATGAAGATCGGCGTAATGTTCGGCAGCCCCGAGACCACGACCGGCGGCAACG
CGCTGAAATTCTATTCTTCCGTCCGCCTCGACATCCGCCGCACCGGATCCATCAAAAAAGGTGAAGAAGTATTGGGCAAC
GAAACCCGCGTCAAAGTCATCAAAAACAAAGTCGCGCCGCCGTTCCGTCAGGCAGAGTTTGACATCCTCTACGGAGAAGG
CATCAGTTGGGAAGGCGAATTGATCGACATCGGCGTGAAAAACGACATCATCAACAAATCCGGCGCGTGGTACAGCTACA
ACGGCGCGAAAATCGGTCAGGGCAAAGACAACGTCCGCGTCTGGCTGAAGGAAAATCCCGAAATTGCCGACGAAATCGAC
GCAAAAATCCGCGCCCTCAACGGCATAGAAATGCACATCACCGAAGGGACGCAGGACGAAACCGACGGCGAACGCCCCGA
AGAATAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KUQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

99.425

100

0.994
  recA Neisseria gonorrhoeae strain FA1090

99.425

100

0.994
  recA Ralstonia pseudosolanacearum GMI1000

74.468

94.54

0.704
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.232

100

0.684
  recA Vibrio cholerae strain A1552

67.232

100

0.684
  recA Glaesserella parasuis strain SC1401

67.521

100

0.681
  recA Pseudomonas stutzeri DSM 10701

71.692

93.391

0.67
  recA Acinetobacter nosocomialis M2

66.097

100

0.667
  recA Acinetobacter baylyi ADP1

66.571

99.713

0.664
  recA Acinetobacter baumannii D1279779

65.805

100

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.689

97.989

0.644
  recA Staphylococcus aureus strain ATCC 12600

65.487

97.414

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

94.253

0.635
  recA Helicobacter pylori 26695

67.385

93.391

0.629
  recA Helicobacter pylori strain NCTC11637

67.077

93.391

0.626
  recA Streptococcus mutans UA159

60.969

100

0.615
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

93.966

0.612
  recA Streptococcus pneumoniae R36A

59.091

100

0.598
  recA Streptococcus pneumoniae Rx1

59.091

100

0.598
  recA Streptococcus pneumoniae D39

59.091

100

0.598
  recA Streptococcus pneumoniae R6

59.091

100

0.598
  recA Streptococcus pneumoniae TIGR4

59.091

100

0.598
  recA Streptococcus thermophilus LMD-9

59.827

99.425

0.595
  recA Streptococcus thermophilus LMG 18311

59.827

99.425

0.595
  recA Streptococcus mitis NCTC 12261

59.884

98.851

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

62.997

93.966

0.592
  recA Streptococcus pyogenes NZ131

61.963

93.678

0.58
  recA Streptococcus mitis SK321

60.606

94.828

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.121

95.115

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.303

94.828

0.572